fr.profi.mzdb.cli

Class MzDbAccess

java.lang.Object

fr.profi.mzdb.cli.MzDbAccess

public class MzDbAccess
extends Object

This class allows to access to a mzDB file and to make some range queries on it. A list of putative features can be provided to extract their corresponding signal.

Version:

0.1

Author:

David Bouyssie

Nested Class Summary

Nested Classes

Modifier and Type	Class and Description
static class	MzDbAccess.CreateMgfCommand
static class	MzDbAccess.DebugCommand
static class	MzDbAccess.ExtractPeaksCommand

Constructor Summary

Constructors

Constructor and Description
MzDbAccess()

Method Summary

Modifier and Type	Method and Description
static void	main(String[] args)
protected static void	print(String string) Print a string in the standard output.
static void	printAvailableCommands(com.beust.jcommander.JCommander jc)
protected static void	println(String string) Print a string in the standard output and terminate the line.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

MzDbAccess

public MzDbAccess()

Method Detail

println

protected static void println(String string)

Print a string in the standard output and terminate the line. Works only if mode<-PRINT_MODE.

Parameters:

string - the string to print

mode - can only assume values PRINT_ALWAYS or PRINT_DEBUG.

print

protected static void print(String string)

Print a string in the standard output. Works only if mode<-PRINT_MODE.

Parameters:

string - the string to print

mode - can only assume values PRINT_ALWAYS or PRINT_DEBUG.

main

public static void main(String[] args)

Parameters:

args -

Throws:

com.almworks.sqlite4java.SQLiteException

printAvailableCommands

public static void printAvailableCommands(com.beust.jcommander.JCommander jc)