fr.profi.mzdb.io.writer.mgf

Interface IPrecursorComputation

All Known Implementing Classes:

DefaultPrecursorComputer

public interface IPrecursorComputation

Method Summary

Modifier and Type	Method and Description
String	getParamName()
int	getPrecursorCharge(MzDbReader mzDbReader, SpectrumHeader spectrumHeader) Returns the precursor m/z value of the specified SpectrumHeader.
double	getPrecursorMz(MzDbReader mzDbReader, SpectrumHeader spectrumHeader) Returns the precursor m/z value of the specified SpectrumHeader.

Method Detail

getPrecursorMz

double getPrecursorMz(MzDbReader mzDbReader,
                      SpectrumHeader spectrumHeader)
               throws com.almworks.sqlite4java.SQLiteException

Returns the precursor m/z value of the specified SpectrumHeader.

Parameters:

header - : the MS2 SpectrumHeader

reader - : the mzdbReader considered

Returns:

the precursor m/z value of the specified SpectrumHeader

Throws:

com.almworks.sqlite4java.SQLiteException

getPrecursorCharge

int getPrecursorCharge(MzDbReader mzDbReader,
                       SpectrumHeader spectrumHeader)
                throws com.almworks.sqlite4java.SQLiteException

Returns the precursor m/z value of the specified SpectrumHeader.

Parameters:

header - : the MS2 SpectrumHeader

reader - : the mzdbReader considered

Returns:

the precursor m/z value of the specified SpectrumHeader

Throws:

com.almworks.sqlite4java.SQLiteException

getParamName

String getParamName()