fr.profi.mzdb.model

Class BoundingBox

java.lang.Object

fr.profi.mzdb.model.BoundingBox

All Implemented Interfaces:

Comparable<BoundingBox>

public class BoundingBox
extends Object
implements Comparable<BoundingBox>

The Class BoundingBox.

Author:

Marc Dubois

Field Summary

Fields

Modifier and Type	Field and Description
protected DataMode	_dataMode The _data mode.
protected long	_firstSpectrumId The _first spectrum id.
protected long	_lastSpectrumId
protected int	_msLevel The _ms level.
protected IBlobReader	_reader The _reader.
protected int	_runSliceId The _run slice id.

Constructor Summary

Constructors

Constructor and Description
BoundingBox(int id, IBlobReader _reader) Instantiates a new bounding box.

Method Summary

Modifier and Type	Method and Description
int	compareTo(BoundingBox bb) Spectrum slice of spectrum at.
long	getFirstSpectrumId() Gets the first spectrum id.
int	getId() Gets the id.
long	getLastSpectrumId()
float	getMaxSpectrumId() Max id.
float	getMinSpectrumId() Min id.
IBlobReader	getReader() Gets the reader.
int	getRunSliceId() Gets the run slice id.
int	getSpectraCount() Spectra count.
void	setFirstSpectrumId(long spectrumId) Sets the first spectrum id.
void	setId(int _id) Sets the id.
void	setLastSpectrumId(long spectrumId)
void	setRunSliceId(int _runSliceId) Sets the run slice id.
SpectrumSlice[]	toSpectrumSlices() As spectrum slices array.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

_firstSpectrumId

protected long _firstSpectrumId

The _first spectrum id.

_lastSpectrumId

protected long _lastSpectrumId

_runSliceId

protected int _runSliceId

The _run slice id.

_msLevel

protected int _msLevel

The _ms level.

_dataMode

protected DataMode _dataMode

The _data mode.

_reader

protected IBlobReader _reader

The _reader.

Constructor Detail

BoundingBox

public BoundingBox(int id,
                   IBlobReader _reader)

Instantiates a new bounding box.

Parameters:

id - the BoundingBox id

_reader - a IBlobReader instance

Method Detail

getId

public int getId()

Gets the id.

Returns:

the id

setId

public void setId(int _id)

Sets the id.

Parameters:

_id - the new id

getReader

public IBlobReader getReader()

Gets the reader.

Returns:

the reader

getFirstSpectrumId

public long getFirstSpectrumId()

Gets the first spectrum id.

Returns:

the first spectrum id

setFirstSpectrumId

public void setFirstSpectrumId(long spectrumId)

Sets the first spectrum id.

Parameters:

spectrumid - the new first spectrum id

getLastSpectrumId

public long getLastSpectrumId()

setLastSpectrumId

public void setLastSpectrumId(long spectrumId)

getRunSliceId

public int getRunSliceId()

Gets the run slice id.

Returns:

the run slice id

setRunSliceId

public void setRunSliceId(int _runSliceId)

Sets the run slice id.

Parameters:

_runSliceId - the new run slice id

getSpectraCount

public int getSpectraCount()

Spectra count.

Returns:

the int

getMinSpectrumId

public float getMinSpectrumId()
                       throws com.almworks.sqlite4java.SQLiteException

Min id.

Returns:

the float

Throws:

com.almworks.sqlite4java.SQLiteException

getMaxSpectrumId

public float getMaxSpectrumId()

Max id.

Returns:

the float

toSpectrumSlices

public SpectrumSlice[] toSpectrumSlices()

As spectrum slices array.

Parameters:

firstSpectrumID - the first spectrum id

runSliceID - the run slice id

Returns:

the spectrum slice[]

compareTo

public int compareTo(BoundingBox bb)

Spectrum slice of spectrum at.

Specified by:

compareTo in interface Comparable<BoundingBox>

Parameters:

idx - the idx

Returns:

the spectrum slice