fr.profi.mzdb.model

Class Peak

java.lang.Object

fr.profi.mzdb.model.Peak

All Implemented Interfaces:

Cloneable, Comparable<Peak>

public class Peak
extends Object
implements Cloneable, Comparable<Peak>

The Class Peak.

Author:

David Bouyssie

Field Summary

Fields

Modifier and Type	Field and Description
protected float	intensity The intensity.
static Comparator<Peak>	intensityComp The intensity comp.
protected ILcContext	lcContext The peak context.
protected float	leftHwhm The left hwhm.
protected double	mz The mz.
protected float	rightHwhm The right hwhm.

Constructor Summary

Constructors

Constructor and Description
Peak(double mz, float intensity) Instantiates a new peak.
Peak(double mz, float intensity, float leftHwhm, float rightHwhm, ILcContext lcContext) Instantiates a new peak.

Method Summary

Modifier and Type	Method and Description
protected Peak	clone()
int	compareTo(Peak aPeak)
float	getIntensity() Gets the intensity.
static Comparator<Peak>	getIntensityComp() Gets the intensity comp.
ILcContext	getLcContext() Gets the lc context.
float	getLeftHwhm() Gets the left hwhm.
double	getMz() Gets the mz.
float	getRightHwhm() Gets the right hwhm.
SpectrumHeader	getSpectrumHeader() Gets the SpectrumHeader.
boolean	isNormalized()
void	normalizeIntensity(float nf)
void	setLcContext(ILcContext lcContext) Sets the lc context.
String	toString()

Methods inherited from class java.lang.Object

equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

mz

protected final double mz

The mz.

intensity

protected float intensity

The intensity.

leftHwhm

protected final float leftHwhm

The left hwhm.

rightHwhm

protected final float rightHwhm

The right hwhm.

lcContext

protected ILcContext lcContext

The peak context.

intensityComp

public static Comparator<Peak> intensityComp

The intensity comp.

Constructor Detail

Peak

public Peak(double mz,
            float intensity,
            float leftHwhm,
            float rightHwhm,
            ILcContext lcContext)

Instantiates a new peak.

Parameters:

mz - the mz

intensity - the intensity

leftHwhm - the left hwhm

rightHwhm - the right hwhm

lcContext - the LC context

Peak

public Peak(double mz,
            float intensity)

Instantiates a new peak.

Parameters:

mz - peak's mass

intensity - peak's intensity

Method Detail

getMz

public double getMz()

Gets the mz.

Returns:

the mz

getIntensity

public float getIntensity()

Gets the intensity.

Returns:

the intensity

getLeftHwhm

public float getLeftHwhm()

Gets the left hwhm.

Returns:

the left hwhm

getRightHwhm

public float getRightHwhm()

Gets the right hwhm.

Returns:

the right hwhm

getLcContext

public ILcContext getLcContext()

Gets the lc context.

Returns:

the lc context

setLcContext

public void setLcContext(ILcContext lcContext)

Sets the lc context.

Parameters:

lcContext - the new lc context

getSpectrumHeader

public SpectrumHeader getSpectrumHeader()
                                 throws ClassCastException

Gets the SpectrumHeader.

Returns:

the SpectrumHeader

Throws:

ClassCastException

isNormalized

public boolean isNormalized()

normalizeIntensity

public void normalizeIntensity(float nf)
                        throws Exception

Throws:

Exception

clone

protected Peak clone()

Overrides:

clone in class Object

toString

public String toString()

Overrides:

toString in class Object

getIntensityComp

public static Comparator<Peak> getIntensityComp()

Gets the intensity comp.

Returns:

the intensity comp

compareTo

public int compareTo(Peak aPeak)

Specified by:

compareTo in interface Comparable<Peak>