Uses of Interface
io.github.msdk.MSDKMethod

Packages that use MSDKMethod

Package	Description
io.github.msdk.alignment.joinaligner
io.github.msdk.alignment.ransac
io.github.msdk.featuredetection.adap3d
io.github.msdk.featuredetection.chromatogrambuilder
io.github.msdk.featuredetection.gridmass
io.github.msdk.featuredetection.msmsdetection
io.github.msdk.featuredetection.srm
io.github.msdk.featuredetection.targeted
io.github.msdk.id.localdatabase
io.github.msdk.id.sirius
io.github.msdk.io
io.github.msdk.io.chromatof
io.github.msdk.io.mgf
io.github.msdk.io.mzdata
io.github.msdk.io.mzdb
io.github.msdk.io.mzml
io.github.msdk.io.mztab
io.github.msdk.io.mzxml
io.github.msdk.io.nativeformats
io.github.msdk.io.netcdf
io.github.msdk.isotopes.isotopegrouper
io.github.msdk.normalization.compound
io.github.msdk.rawdata.filters
io.github.msdk.spectra.centroiding
io.github.msdk.spectra.peakinvestigator

Uses of MSDKMethod in io.github.msdk.alignment.joinaligner

Classes in io.github.msdk.alignment.joinaligner that implement MSDKMethod

Modifier and Type	Class and Description
class	JoinAlignerMethod This class aligns feature tables based on a match score.

Uses of MSDKMethod in io.github.msdk.alignment.ransac

Classes in io.github.msdk.alignment.ransac that implement MSDKMethod

Modifier and Type	Class and Description
class	RansacAlignerMethod This class aligns feature tables using the RANSAC method.

Uses of MSDKMethod in io.github.msdk.featuredetection.adap3d

Classes in io.github.msdk.featuredetection.adap3d that implement MSDKMethod

Modifier and Type	Class and Description
class	ADAP3DFeatureDetectionMethod This class is used to run the whole ADAP3D algorithm and get peaks.

Uses of MSDKMethod in io.github.msdk.featuredetection.chromatogrambuilder

Classes in io.github.msdk.featuredetection.chromatogrambuilder that implement MSDKMethod

Modifier and Type	Class and Description
class	ChromatogramBuilderMethod ChromatogramBuilderMethod class.

Uses of MSDKMethod in io.github.msdk.featuredetection.gridmass

Classes in io.github.msdk.featuredetection.gridmass that implement MSDKMethod

Modifier and Type	Class and Description
class	GridMassMethod GridMassMethod class.

Uses of MSDKMethod in io.github.msdk.featuredetection.msmsdetection

Classes in io.github.msdk.featuredetection.msmsdetection that implement MSDKMethod

Modifier and Type	Class and Description
class	MsMsDetectionMethod This class creates a list of IonAnnotations for a RawDataFile based the MS2 scans.

Uses of MSDKMethod in io.github.msdk.featuredetection.srm

Classes in io.github.msdk.featuredetection.srm that implement MSDKMethod

Modifier and Type	Class and Description
class	SrmDetectionMethod This class creates a feature table based on the SRM chromatograms from a raw data file.

Uses of MSDKMethod in io.github.msdk.featuredetection.targeted

Classes in io.github.msdk.featuredetection.targeted that implement MSDKMethod

Modifier and Type	Class and Description
class	TargetedDetectionMethod This class creates a list of Chromatograms from a RawDataFile based on a list of IonAnnotations.

Uses of MSDKMethod in io.github.msdk.id.localdatabase

Classes in io.github.msdk.id.localdatabase that implement MSDKMethod

Modifier and Type	Class and Description
class	LocalDatabaseSearchMethod This class searches through a feature table to find hits in a local database using m/z and retention time values.

Uses of MSDKMethod in io.github.msdk.id.sirius

Classes in io.github.msdk.id.sirius that implement MSDKMethod

Modifier and Type	Class and Description
class	FingerIdWebMethod Class FingerIdWebMethod
class	SiriusIdentificationMethod SiriusIdentificationMethod class.

Uses of MSDKMethod in io.github.msdk.io

Classes in io.github.msdk.io that implement MSDKMethod

Modifier and Type	Class and Description
class	FeatureTableImportMethod This class detects the type of the given data file using the FileTypeDetectionAlgorithm and then imports the feature table using the right import algorithm.
class	RawDataFileImportMethod This class detects the type of the given data file using the FileTypeDetectionAlgorithm and then imports the raw data by performing the right import algorithm.

Uses of MSDKMethod in io.github.msdk.io.chromatof

Classes in io.github.msdk.io.chromatof that implement MSDKMethod

Modifier and Type	Class and Description
class	ChromaTofFileImportMethod ChromaTofFileImportMethod class.

Uses of MSDKMethod in io.github.msdk.io.mgf

Classes in io.github.msdk.io.mgf that implement MSDKMethod

Modifier and Type	Class and Description
class	MgfFileExportMethod MgfExportAlgorithm class.
class	MgfFileImportMethod MgfFileImportMethod class.

Uses of MSDKMethod in io.github.msdk.io.mzdata

Classes in io.github.msdk.io.mzdata that implement MSDKMethod

Modifier and Type	Class and Description
class	MzDataFileImportMethod This class reads mzData files.

Uses of MSDKMethod in io.github.msdk.io.mzdb

Classes in io.github.msdk.io.mzdb that implement MSDKMethod

Modifier and Type	Class and Description
class	MzDBFileImportMethod This class contains methods which parse data in MzDB format from File.

Uses of MSDKMethod in io.github.msdk.io.mzml

Classes in io.github.msdk.io.mzml that implement MSDKMethod

Modifier and Type	Class and Description
class	MzMLFileExportMethod This class contains methods which can be used to write data contained in a RawDataFile to a file, in mzML format
class	MzMLFileImportMethod This class contains methods which parse data in MzML format from File, Path or InputStream Scans and Chromatograms will be parsed, and the values pre-loaded when the Predicate is passed.

Uses of MSDKMethod in io.github.msdk.io.mztab

Classes in io.github.msdk.io.mztab that implement MSDKMethod

Modifier and Type	Class and Description
class	MzTabFileExportMethod CsvFileExportMethod class.
class	MzTabFileImportMethod MzTabFileImportMethod class.

Uses of MSDKMethod in io.github.msdk.io.mzxml

Classes in io.github.msdk.io.mzxml that implement MSDKMethod

Modifier and Type	Class and Description
class	MzXMLFileImportMethod This class reads mzXML file format.
class	MzXMLFileParser MzXMLFileParser class.

Uses of MSDKMethod in io.github.msdk.io.nativeformats

Classes in io.github.msdk.io.nativeformats that implement MSDKMethod

Modifier and Type	Class and Description
class	ThermoRawImportMethod ThermoRawImportMethod class.
class	WatersRawImportMethod WatersRawImportMethod class.

Uses of MSDKMethod in io.github.msdk.io.netcdf

Classes in io.github.msdk.io.netcdf that implement MSDKMethod

Modifier and Type	Class and Description
class	NetCDFFileExportMethod This class contains methods which can be used to write data contained in a RawDataFile to a file, in netCDF-3 format
class	NetCDFFileImportMethod NetCDFFileImportMethod class.

Uses of MSDKMethod in io.github.msdk.isotopes.isotopegrouper

Classes in io.github.msdk.isotopes.isotopegrouper that implement MSDKMethod

Modifier and Type	Class and Description
class	IsotopeGrouperMethod This class searches through a feature table and groups isotopes under a single feature.

Uses of MSDKMethod in io.github.msdk.normalization.compound

Classes in io.github.msdk.normalization.compound that implement MSDKMethod

Modifier and Type	Class and Description
class	FeatureNormalizationByCompoundMethod This class normalized a list of feature table columns based on a set of features.

Uses of MSDKMethod in io.github.msdk.rawdata.filters

Classes in io.github.msdk.rawdata.filters that implement MSDKMethod

Modifier and Type	Class and Description
class	MSDKFilteringMethod MSDKFilteringMethod class.

Uses of MSDKMethod in io.github.msdk.spectra.centroiding

Classes in io.github.msdk.spectra.centroiding that implement MSDKMethod

Modifier and Type	Class and Description
class	MSDKCentroidingMethod MSDKCentroidingMethod class.

Uses of MSDKMethod in io.github.msdk.spectra.peakinvestigator

Classes in io.github.msdk.spectra.peakinvestigator that implement MSDKMethod

Modifier and Type	Class and Description
class	PeakInvestigatorScanBundlingMethod This class represents a method for bundling scans for upload to PeakInvestigator software services.
class	PeakInvestigatorScanExtractingMethod This class extracts scans from the results returned from PeakInvestigator.