Package | Description |
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io.github.msdk.featuredetection.adap3d.algorithms |
Modifier and Type | Method and Description |
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SliceSparseMatrix.Triplet |
SliceSparseMatrix.findNextMaxIntensity()
This method finds next maximum intensity from filterListOfTriplet
|
Modifier and Type | Method and Description |
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List<SliceSparseMatrix.Triplet> |
SliceSparseMatrix.getHorizontalSlice(double mz,
int lowerScanBound,
int upperScanBound)
This method returns the MultiKeyMap slice of data for given mz,lowerScanBound,upperScanBound
|
List<SliceSparseMatrix.Triplet> |
SliceSparseMatrix.getHorizontalSlice(int roundedMZ,
int lowerScanBound,
int upperScanBound)
This method returns the MultiKeyMap slice of data for rounded mz,lowerScanBound,upperScanBound
|
List<SliceSparseMatrix.Triplet> |
SliceSparseMatrix.removeDataPoints(int roundedmz,
int lowerScanBound,
int upperScanBound)
This method removes data points from whole data set for given mz,lowerscanbound and
upperscanbound
|
List<SliceSparseMatrix.Triplet> |
SliceSparseMatrix.restoreDataPoints(int roundedmz,
int lowerScanBound,
int upperScanBound)
This method restores data points from whole data set for given mz,lowerscanbound and
upperscanbound
|
Modifier and Type | Method and Description |
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float |
SliceSparseMatrix.getFinishedPercent(SliceSparseMatrix.Triplet maxIntensityTriplet)
This method tracks progress of algorithm
|
Modifier and Type | Method and Description |
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boolean |
BiGaussianSimilarityTest.execute(List<SliceSparseMatrix.Triplet> slice,
int leftBound,
int rightBound,
int roundedMZ,
double biGaussianSimilarityThreshold)
execute method is used for testing a peak with given m/z-value (variable mz) and left and right
bounds (variables leftBound and rightBound).
|
List<ContinuousWaveletTransform.DataPoint> |
SliceSparseMatrix.getCWTDataPoint(List<SliceSparseMatrix.Triplet> slice)
This method returns sorted list of ContinuousWaveletTransform.DataPoint object.Object contain
retention time and intensity values.
|
static double |
CurveTool.normalize(List<SliceSparseMatrix.Triplet> slice,
int leftBound,
int rightBound,
int roundedMz,
double[] referenceEIC)
normalize method is used for normalizing EIC by calculating its area and dividing each
intensity by the area.
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