io.github.msdk.featuredetection.adap3d.datamodel

Class Peak

java.lang.Object

io.github.msdk.featuredetection.adap3d.datamodel.Peak

All Implemented Interfaces:

Serializable, Cloneable

public class Peak
extends Object
implements Cloneable, Serializable

Class Peak contains all information about a peak as well as its chromatogram, and some methods to get the information

Author:

aleksandrsmirnov Modified by Dharak Shah to include in MSDK

See Also:

Serialized Form

Constructor Summary

Constructors

Constructor and Description
Peak(NavigableMap<Double,Double> chromatogram, double mz) Constructor for Peak.
Peak(NavigableMap<Double,Double> chromatogram, PeakInfo info) Constructor for Peak.
Peak(Peak peak) Constructor for Peak.

Method Summary

Modifier and Type	Method and Description
Peak	clone()
NavigableMap<Double,Double>	getChromatogram() Getter for the field chromatogram.
PeakInfo	getInfo() Getter for the field info.
double	getIntensity() getIntensity.
double	getMZ() getMZ.
double	getNorm() Getter for the field norm.
double	getRetTime() getRetTime.
void	setShift(double shift) Setter for the field shift.
String	toString()

Methods inherited from class java.lang.Object

equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

Peak

public Peak(Peak peak)

Constructor for Peak.

Parameters:

peak - a Peak object.

Peak

public Peak(NavigableMap<Double,Double> chromatogram,
            PeakInfo info)

Constructor for Peak.

Parameters:

chromatogram - a NavigableMap object.

info - a PeakInfo object.

Peak

public Peak(NavigableMap<Double,Double> chromatogram,
            double mz)

Constructor for Peak.

Parameters:

chromatogram - a NavigableMap object.

mz - a double.

Method Detail

setShift

public void setShift(double shift)

Setter for the field shift.

Parameters:

shift - a double.

clone

public Peak clone()

Overrides:

clone in class Object

getChromatogram

public NavigableMap<Double,Double> getChromatogram()

Getter for the field chromatogram.

Returns:

a NavigableMap object.

getInfo

public PeakInfo getInfo()

Getter for the field info.

Returns:

a PeakInfo object.

getRetTime

public double getRetTime()

getRetTime.

Returns:

a double.

getMZ

public double getMZ()

getMZ.

Returns:

a double.

getIntensity

public double getIntensity()

getIntensity.

Returns:

a double.

getNorm

public double getNorm()

Getter for the field norm.

Returns:

a double.

toString

public String toString()

Overrides:

toString in class Object