io.github.msdk.featuredetection.openms

Class FeatureFinderMetaboDetector

java.lang.Object

io.github.msdk.featuredetection.openms.FeatureFinderMetaboDetector

public class FeatureFinderMetaboDetector
extends Object

FeatureFinderMetaboDetector class.

This class creates a list m/z values (double) for a mzML input file using OpenMS TOPP Tools

Constructor Summary

Constructors

Constructor and Description
FeatureFinderMetaboDetector(File mzMLFile) Constructor for FeatureFinderMetaboDetector.
FeatureFinderMetaboDetector(String mzMLFilePath) Constructor for FeatureFinderMetaboDetector.

Method Summary

Modifier and Type	Method and Description
List<Double>	execute() Runs FeatureFinderMetabo on the output file, processes the output file for mz values data.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

FeatureFinderMetaboDetector

public FeatureFinderMetaboDetector(String mzMLFilePath)
                            throws MSDKException

Constructor for FeatureFinderMetaboDetector.

Parameters:

mzMLFilePath - Path to mzML File to be processed

Throws:

MSDKException - if any.

FeatureFinderMetaboDetector

public FeatureFinderMetaboDetector(File mzMLFile)
                            throws MSDKException

Constructor for FeatureFinderMetaboDetector.

Parameters:

mzMLFile - File reference to mzML File to be processed

Throws:

MSDKException - if any.

Method Detail

execute

public List<Double> execute()
                     throws XMLStreamException,
                            IOException,
                            MSDKException

Runs FeatureFinderMetabo on the output file, processes the output file for mz values data.

Returns:

List of m/z Values

Throws:

XMLStreamException - if any.

IOException - if any.

MSDKException - if any.