Constant Field Values

Contents

• fr.profi.*
• io.github.*

fr.profi.*

fr.profi.mzdb.db.model.InstrumentConfiguration

Modifier and Type	Constant Field	Value
public static final String	TABLE_NAME	"instrument_configuration"

fr.profi.mzdb.db.model.MzDbHeader

Modifier and Type	Constant Field	Value
public static final String	TABLE_NAME	"mzdb"

fr.profi.mzdb.db.model.Run

Modifier and Type	Constant Field	Value
public static final String	TABLE_NAME	"run"

fr.profi.mzdb.db.model.Sample

Modifier and Type	Constant Field	Value
public static final String	TABLE_NAME	"sample"

fr.profi.mzdb.db.model.Software

Modifier and Type	Constant Field	Value
public static final String	TABLE_NAME	"software"

fr.profi.mzdb.db.model.SourceFile

Modifier and Type	Constant Field	Value
public static final String	TABLE_NAME	"source_file"

fr.profi.mzdb.io.reader.cache.AbstractSpectrumHeaderReader

Modifier and Type	Constant Field	Value
protected static final int	TIME_INDEX_WIDTH	15

fr.profi.mzdb.util.primitives.BytesUtils

Modifier and Type	Constant Field	Value
public static final int	BYTE_LEN	1
public static final int	DOUBLE_LEN	8
public static final int	FLOAT_LEN	4
public static final int	INT_LEN	4
public static final int	LONG_LEN	8
public static final int	SHORT_LEN	2

io.github.*

io.github.msdk.featuredetection.adap3d.algorithms.CurveTool

Modifier and Type	Constant Field	Value
public static final double	FWHM_CONSTANT	2.35482

io.github.msdk.featuredetection.adap3d.algorithms.Peak3DTest

Modifier and Type	Constant Field	Value
public static final double	EPSILON	1.0E-8

io.github.msdk.io.mzml.data.MzMLCV

Modifier and Type	Constant Field	Value
public static final String	cvActivationCID	"MS:1000133"
public static final String	cvActivationEnergy	"MS:1000045"
public static final String	cvCentroidSpectrum	"MS:1000127"
public static final String	cvChargeState	"MS:1000041"
public static final String	cvChromatogramBPC	"MS:1000628"
public static final String	cvChromatogramMRM_SRM	"MS:1001473"
public static final String	cvChromatogramSIC	"MS:1000627"
public static final String	cvChromatogramTIC	"MS:1000235"
public static final String	cvHighestMz	"MS:1000527"
public static final String	cvIntensityArray	"MS:1000515"
public static final String	cvIsolationWindowLowerOffset	"MS:1000828"
public static final String	cvIsolationWindowTarget	"MS:1000827"
public static final String	cvIsolationWindowUpperOffset	"MS:1000829"
public static final String	cvLowestMz	"MS:1000528"
public static final String	cvMS1Spectrum	"MS:1000579"
public static final String	cvMSLevel	"MS:1000511"
public static final String	cvMz	"MS:1000040"
public static final String	cvMzArray	"MS:1000514"
public static final String	cvPolarityNegative	"MS:1000129"
public static final String	cvPolarityPositive	"MS:1000130"
public static final String	cvPrecursorMz	"MS:1000744"
public static final String	cvProfileSpectrum	"MS:1000128"
public static final String	cvRetentionTimeArray	"MS:1000595"
public static final String	cvScanFilterString	"MS:1000512"
public static final String	cvScanWindowLowerLimit	"MS:1000501"
public static final String	cvScanWindowUpperLimit	"MS:1000500"
public static final String	cvTIC	"MS:1000285"
public static final String	cvUnitsIntensity1	"MS:1000131"
public static final String	cvUnitsMin1	"MS:1000038"
public static final String	cvUnitsMin2	"UO:0000031"
public static final String	cvUnitsSec	"UO:0000010"
public static final String	cvUVSpectrum	"MS:1000804"
public static final String	MS_RT_RETENTION_TIME	"MS:1000894"
public static final String	MS_RT_RETENTION_TIME_LOCAL	"MS:1000895"
public static final String	MS_RT_RETENTION_TIME_NORMALIZED	"MS:1000896"
public static final String	MS_RT_SCAN_START	"MS:1000016"

io.github.msdk.io.mzml.data.MzMLTags

Modifier and Type	Constant Field	Value
public static final String	ATTR_ACCESSION	"accession"
public static final String	ATTR_COUNT	"count"
public static final String	ATTR_CV_REF	"cvRef"
public static final String	ATTR_DEFAULT_ARRAY_LENGTH	"defaultArrayLength"
public static final String	ATTR_DEFAULT_DATA_PROCESSING_REF	"defaultDataProcessingRef"
public static final String	ATTR_DEFAULT_INSTRUMENT_CONFIGURATION_REF	"defaultInstrumentConfigurationRef"
public static final String	ATTR_ENCODED_LENGTH	"encodedLength"
public static final String	ATTR_ID	"id"
public static final String	ATTR_ID_REF	"idRef"
public static final String	ATTR_INDEX	"index"
public static final String	ATTR_NAME	"name"
public static final String	ATTR_ORDER	"order"
public static final String	ATTR_SCHEME_LOCATION	"schemeLocation"
public static final String	ATTR_SOFTWARE_REF	"softwareRef"
public static final String	ATTR_SPECTRUM_REF	"spectrumRef"
public static final String	ATTR_UNIT_ACCESSION	"unitAccession"
public static final String	ATTR_VALUE	"value"
public static final String	ATTR_VERSION	"version"
public static final String	ATTR_XSI	"xsi"
public static final String	TAG_ACTIVATION	"activation"
public static final String	TAG_BINARY	"binary"
public static final String	TAG_BINARY_DATA_ARRAY	"binaryDataArray"
public static final String	TAG_BINARY_DATA_ARRAY_LIST	"binaryDataArrayList"
public static final String	TAG_CHROMATOGRAM	"chromatogram"
public static final String	TAG_CHROMATOGRAM_LIST	"chromatogramList"
public static final String	TAG_CV_LIST	"cvList"
public static final String	TAG_CV_PARAM	"cvParam"
public static final String	TAG_DATA_PROCESSING	"dataProcessing"
public static final String	TAG_DATA_PROCESSING_LIST	"dataProcessingList"
public static final String	TAG_FILE_CHECKSUM	"fileChecksum"
public static final String	TAG_INDEX	"index"
public static final String	TAG_INDEX_LIST	"indexList"
public static final String	TAG_INDEX_LIST_OFFSET	"indexListOffset"
public static final String	TAG_INDEXED_MZML	"indexedmzML"
public static final String	TAG_ISOLATION_WINDOW	"isolationWindow"
public static final String	TAG_MZML	"mzML"
public static final String	TAG_OFFSET	"offset"
public static final String	TAG_PRECURSOR	"precursor"
public static final String	TAG_PRECURSOR_LIST	"precursorList"
public static final String	TAG_PROCESSING_METHOD	"processingMethod"
public static final String	TAG_PRODUCT	"product"
public static final String	TAG_PRODUCT_LIST	"productList"
public static final String	TAG_REF_PARAM_GROUP	"referenceableParamGroup"
public static final String	TAG_REF_PARAM_GROUP_LIST	"referenceableParamGroupList"
public static final String	TAG_REF_PARAM_GROUP_REF	"referenceableParamGroupRef"
public static final String	TAG_RUN	"run"
public static final String	TAG_SCAN	"scan"
public static final String	TAG_SCAN_LIST	"scanList"
public static final String	TAG_SCAN_WINDOW	"scanWindow"
public static final String	TAG_SCAN_WINDOW_LIST	"scanWindowList"
public static final String	TAG_SELECTED_ION	"selectedIon"
public static final String	TAG_SELECTED_ION_LIST	"selectedIonList"
public static final String	TAG_SPECTRUM	"spectrum"
public static final String	TAG_SPECTRUM_LIST	"spectrumList"

io.github.msdk.io.mzml.util.MSNumpress

Modifier and Type	Constant Field	Value
public static final String	ACC_NUMPRESS_LINEAR	"MS:1002312"
public static final String	ACC_NUMPRESS_PIC	"MS:1002313"
public static final String	ACC_NUMPRESS_SLOF	"MS:1002314"

io.github.msdk.io.mzml.util.TagTracker

Modifier and Type	Constant Field	Value
protected static final int	DEFAULT_CHAR_ARR_SIZE	64
protected static final int	DEFAULT_MAX_DEPTH	128