Hierarchy For All Packages

Package Hierarchies:

• fr.profi.mzdb,
• fr.profi.mzdb.cli,
• fr.profi.mzdb.db.model,
• fr.profi.mzdb.db.model.params,
• fr.profi.mzdb.db.model.params.param,
• fr.profi.mzdb.db.model.params.thermo,
• fr.profi.mzdb.db.table,
• fr.profi.mzdb.io.reader,
• fr.profi.mzdb.io.reader.bb,
• fr.profi.mzdb.io.reader.cache,
• fr.profi.mzdb.io.reader.iterator,
• fr.profi.mzdb.io.reader.provider,
• fr.profi.mzdb.io.reader.table,
• fr.profi.mzdb.io.writer,
• fr.profi.mzdb.io.writer.mgf,
• fr.profi.mzdb.model,
• fr.profi.mzdb.util.concurrent,
• fr.profi.mzdb.util.iterator,
• fr.profi.mzdb.util.jaxb,
• fr.profi.mzdb.util.lambda,
• fr.profi.mzdb.util.misc,
• fr.profi.mzdb.util.ms,
• fr.profi.mzdb.util.primitives,
• fr.profi.mzdb.util.sqlite,
• fr.profi.mzdb.util.threading,
• io.github.msdk,
• io.github.msdk.alignment.joinaligner,
• io.github.msdk.alignment.ransac,
• io.github.msdk.datamodel,
• io.github.msdk.featuredetection.adap3d,
• io.github.msdk.featuredetection.adap3d.algorithms,
• io.github.msdk.featuredetection.adap3d.datamodel,
• io.github.msdk.featuredetection.chromatogrambuilder,
• io.github.msdk.featuredetection.gridmass,
• io.github.msdk.featuredetection.msmsdetection,
• io.github.msdk.featuredetection.openms,
• io.github.msdk.featuredetection.srm,
• io.github.msdk.featuredetection.targeted,
• io.github.msdk.id.localdatabase,
• io.github.msdk.id.sirius,
• io.github.msdk.io,
• io.github.msdk.io.chromatof,
• io.github.msdk.io.filetypedetection,
• io.github.msdk.io.mgf,
• io.github.msdk.io.msp,
• io.github.msdk.io.mzdata,
• io.github.msdk.io.mzdb,
• io.github.msdk.io.mzml,
• io.github.msdk.io.mzml.data,
• io.github.msdk.io.mzml.util,
• io.github.msdk.io.mztab,
• io.github.msdk.io.mzxml,
• io.github.msdk.io.nativeformats,
• io.github.msdk.io.netcdf,
• io.github.msdk.io.txt,
• io.github.msdk.isotopes.isotopegrouper,
• io.github.msdk.isotopes.isotopepattern,
• io.github.msdk.normalization.compound,
• io.github.msdk.rawdata.filters,
• io.github.msdk.spectra.centroiding,
• io.github.msdk.spectra.centroidprofiledetection,
• io.github.msdk.spectra.peakinvestigator,
• io.github.msdk.spectra.peakinvestigator.providers,
• io.github.msdk.spectra.similarity,
• io.github.msdk.spectra.splash,
• io.github.msdk.util,
• io.github.msdk.util.tolerances

Class Hierarchy

• java.lang.Object
  • fr.profi.mzdb.io.reader.bb.AbstractBlobReader (implements fr.profi.mzdb.io.reader.bb.IBlobReader)
    • fr.profi.mzdb.io.reader.bb.BytesReader
    • fr.profi.mzdb.io.reader.bb.SQLiteBlobReader
    • fr.profi.mzdb.io.reader.bb.StreamReader
  • fr.profi.mzdb.util.misc.AbstractInMemoryIdGen
    • fr.profi.mzdb.db.model.AbstractTableModel (implements fr.profi.mzdb.db.model.params.IParamContainer)
      • fr.profi.mzdb.db.model.MzDbHeader
      • fr.profi.mzdb.db.model.Run
      • fr.profi.mzdb.db.model.Sample
      • fr.profi.mzdb.db.model.Software
      • fr.profi.mzdb.db.model.SourceFile
      • fr.profi.mzdb.model.SpectrumHeader (implements fr.profi.mzdb.model.ILcContext)
    • fr.profi.mzdb.db.model.InstrumentConfiguration
    • fr.profi.mzdb.model.RunSliceData
    • fr.profi.mzdb.model.RunSliceHeader (implements java.lang.Comparable<T>)
  • java.util.AbstractMap<K,V> (implements java.util.Map<K,V>)
    • java.util.HashMap<K,V> (implements java.lang.Cloneable, java.util.Map<K,V>, java.io.Serializable)
      • java.util.LinkedHashMap<K,V> (implements java.util.Map<K,V>)
        • io.github.msdk.io.chromatof.TableRow
  • java.util.AbstractMap.SimpleImmutableEntry<K,V> (implements java.util.Map.Entry<K,V>, java.io.Serializable)
    • io.github.msdk.io.chromatof.Pair<F,S>
  • io.github.msdk.datamodel.AbstractMsSpectrum (implements io.github.msdk.datamodel.MsSpectrum)
    • io.github.msdk.io.mgf.MgfMsSpectrum
    • io.github.msdk.io.msp.MspSpectrum
    • io.github.msdk.datamodel.SimpleMsScan (implements io.github.msdk.datamodel.MsScan)
      • io.github.msdk.io.netcdf.NetCDFMsScan
    • io.github.msdk.datamodel.SimpleMsSpectrum
  • fr.profi.mzdb.AbstractMzDbReader
    • fr.profi.mzdb.MzDbAsyncReader
    • fr.profi.mzdb.MzDbReader
  • fr.profi.mzdb.db.model.params.AbstractParamTree
    • fr.profi.mzdb.db.model.params.Activation
    • fr.profi.mzdb.db.model.params.Component
      • fr.profi.mzdb.db.model.params.AnalyzerComponent
      • fr.profi.mzdb.db.model.params.DetectorComponent
      • fr.profi.mzdb.db.model.params.SourceComponent
    • fr.profi.mzdb.db.model.params.ComponentList
    • fr.profi.mzdb.db.model.params.IsolationWindowParamTree
    • fr.profi.mzdb.db.model.params.ParamTree
    • fr.profi.mzdb.db.model.params.ScanList
    • fr.profi.mzdb.db.model.params.ScanParamTree
    • fr.profi.mzdb.db.model.params.ScanWindow
    • fr.profi.mzdb.db.model.params.ScanWindowList
    • fr.profi.mzdb.db.model.params.SelectedIon
    • fr.profi.mzdb.db.model.params.SelectedIonList
  • fr.profi.mzdb.io.reader.iterator.AbstractSpectrumSliceIterator
    • fr.profi.mzdb.io.reader.iterator.AbstractRunSliceIterator (implements java.util.Iterator<E>)
      • fr.profi.mzdb.io.reader.iterator.LcMsnRunSliceIterator (implements java.util.Iterator<E>)
      • fr.profi.mzdb.io.reader.iterator.LcMsRunSliceIterator (implements java.util.Iterator<E>)
    • fr.profi.mzdb.io.reader.iterator.SpectrumIterator (implements java.util.Iterator<E>)
    • fr.profi.mzdb.io.reader.iterator.SpectrumRangeIterator.MsSpectrumRangeIteratorImpl (implements java.util.Iterator<E>)
  • fr.profi.mzdb.io.reader.iterator.AbstractStatementIterator<E> (implements fr.profi.mzdb.io.reader.iterator.IStatementExtractor<T>, java.util.Iterator<E>)
    • fr.profi.mzdb.io.reader.iterator.BoundingBoxIterator
  • fr.profi.mzdb.io.reader.table.AbstractTableModelReader<T>
    • fr.profi.mzdb.io.reader.table.InstrumentConfigReader
    • fr.profi.mzdb.io.reader.table.MzDbHeaderReader
    • fr.profi.mzdb.io.reader.table.RunReader
    • fr.profi.mzdb.io.reader.table.SampleReader
    • fr.profi.mzdb.io.reader.table.SoftwareReader
    • fr.profi.mzdb.io.reader.table.SourceFileReader
  • io.github.msdk.featuredetection.adap3d.ADAP3DFeatureDetectionMethod (implements io.github.msdk.MSDKMethod<ResultType>)
  • io.github.msdk.featuredetection.adap3d.ADAP3DFeatureDetectionParameters
  • io.github.msdk.featuredetection.adap3d.algorithms.ADAP3DPeakDetectionAlgorithm
  • io.github.msdk.featuredetection.adap3d.algorithms.ADAP3DPeakDetectionAlgorithm.GoodPeakInfo
  • io.github.msdk.alignment.ransac.AlignStructMol (implements java.util.Comparator<T>)
  • io.github.msdk.util.ArrayUtil
  • fr.profi.mzdb.BBSizes
  • io.github.msdk.featuredetection.adap3d.algorithms.BiGaussian
  • io.github.msdk.featuredetection.adap3d.algorithms.BiGaussianSimilarityTest
  • io.github.msdk.spectra.centroiding.BinningCentroidingAlgorithm (implements io.github.msdk.spectra.centroiding.MSDKCentroidingAlgorithm)
  • fr.profi.mzdb.model.BoundingBox (implements java.lang.Comparable<T>)
  • fr.profi.mzdb.io.reader.bb.BoundingBoxBuilder
  • fr.profi.mzdb.util.iterator.BufferedIterator<E> (implements java.util.Iterator<E>)
  • fr.profi.mzdb.util.primitives.BytesUtils
  • fr.profi.mzdb.util.concurrent.CallableCallback<V> (implements java.util.concurrent.Callable<V>)
  • io.github.msdk.io.chromatof.ChromaTofFileImportMethod (implements io.github.msdk.MSDKMethod<ResultType>)
  • io.github.msdk.io.chromatof.ChromaTofParser
  • io.github.msdk.io.chromatof.ChromaTofParser.TableColumn
  • fr.profi.mzdb.model.Chromatogram
  • io.github.msdk.featuredetection.chromatogrambuilder.ChromatogramBuilderMethod (implements io.github.msdk.MSDKMethod<ResultType>)
  • io.github.msdk.util.ChromatogramUtil
  • io.github.msdk.util.tolerances.ConstantDaTolerance (implements io.github.msdk.util.tolerances.MzTolerance)
  • io.github.msdk.util.tolerances.ConstantPpmTolerance (implements io.github.msdk.util.tolerances.MzTolerance)
  • io.github.msdk.id.sirius.ConstraintsGenerator
  • io.github.msdk.featuredetection.adap3d.algorithms.ContinuousWaveletTransform
  • io.github.msdk.featuredetection.adap3d.algorithms.ContinuousWaveletTransform.DataPoint
  • io.github.msdk.rawdata.filters.CropFilterAlgorithm (implements io.github.msdk.rawdata.filters.MSDKFilteringAlgorithm)
  • io.github.msdk.featuredetection.adap3d.algorithms.CurveTool
  • fr.profi.mzdb.db.model.params.param.CVParam
  • fr.profi.mzdb.model.DataEncoding (implements java.lang.Cloneable)
  • fr.profi.mzdb.model.DataPoint
  • io.github.msdk.util.DataPointSorter
  • fr.profi.mzdb.io.writer.mgf.DefaultPrecursorComputer (implements fr.profi.mzdb.io.writer.mgf.IPrecursorComputation)
  • io.github.msdk.spectra.centroiding.ExactMassCentroidingAlgorithm (implements io.github.msdk.spectra.centroiding.MSDKCentroidingAlgorithm)
  • fr.profi.mzdb.util.threading.Executor
  • io.github.msdk.featuredetection.openms.FeatureFinderMetaboDetector
  • io.github.msdk.featuredetection.openms.FeatureFinderMetaboLocator
  • io.github.msdk.normalization.compound.FeatureNormalizationByCompoundMethod (implements io.github.msdk.MSDKMethod<ResultType>)
  • io.github.msdk.io.FeatureTableImportMethod (implements io.github.msdk.MSDKMethod<ResultType>)
  • io.github.msdk.util.FeatureTableUtil
  • io.github.msdk.featuredetection.adap3d.algorithms.FeatureTools
  • io.github.msdk.io.mzml.util.FileMemoryMapper
  • io.github.msdk.io.filetypedetection.FileTypeDetectionAlgorithm
  • io.github.msdk.id.sirius.FingerIdWebMethod (implements io.github.msdk.MSDKMethod<ResultType>)
  • io.github.msdk.featuredetection.gridmass.GridMassMethod (implements io.github.msdk.MSDKMethod<ResultType>)
  • java.io.InputStream (implements java.io.Closeable)
    • io.github.msdk.io.mzml.util.ByteBufferInputStream
    • io.github.msdk.io.mzxml.ByteBufferInputStreamAdapter
  • io.github.msdk.util.IonTypeUtil
  • fr.profi.mzdb.model.IsolationWindow
  • io.github.msdk.isotopes.isotopegrouper.IsotopeGrouperMethod (implements io.github.msdk.MSDKMethod<ResultType>)
  • io.github.msdk.isotopes.isotopepattern.IsotopePatternGeneratorAlgorithm
  • io.github.msdk.alignment.joinaligner.JoinAlignerMethod (implements io.github.msdk.MSDKMethod<ResultType>)
  • io.github.msdk.id.sirius.LocalArrayUtil
  • io.github.msdk.id.localdatabase.LocalDatabaseSearchMethod (implements io.github.msdk.MSDKMethod<ResultType>)
  • io.github.msdk.spectra.centroiding.LocalMaximaCentroidingAlgorithm (implements io.github.msdk.spectra.centroiding.MSDKCentroidingAlgorithm)
  • io.github.msdk.featuredetection.adap3d.algorithms.Math
  • io.github.msdk.util.MathUtils
  • io.github.msdk.util.tolerances.MaximumMzTolerance (implements io.github.msdk.util.tolerances.MzTolerance)
  • io.github.msdk.rawdata.filters.MeanFilterAlgorithm (implements io.github.msdk.rawdata.filters.MSDKFilteringAlgorithm)
  • io.github.msdk.io.mgf.MgfFileExportMethod (implements io.github.msdk.MSDKMethod<ResultType>)
  • io.github.msdk.io.mgf.MgfFileImportMethod (implements io.github.msdk.MSDKMethod<ResultType>)
  • fr.profi.mzdb.io.writer.mgf.MgfHeader
  • fr.profi.mzdb.io.writer.mgf.MgfHeaderEntry
  • fr.profi.mzdb.io.writer.mgf.MgfWriter
  • io.github.msdk.spectra.centroiding.MSDKCentroidingMethod (implements io.github.msdk.MSDKMethod<ResultType>)
  • io.github.msdk.rawdata.filters.MSDKFilteringMethod (implements io.github.msdk.MSDKMethod<ResultType>)
  • io.github.msdk.MSDKVersion
  • io.github.msdk.featuredetection.msmsdetection.MsMsDetectionMethod (implements io.github.msdk.MSDKMethod<ResultType>)
  • io.github.msdk.io.mzml.util.MSNumpress
  • io.github.msdk.io.msp.MspExportAlgorithm
  • io.github.msdk.io.msp.MspImportAlgorithm
  • io.github.msdk.util.MsScanUtil
  • fr.profi.mzdb.io.writer.MsSpectrumTSVWriter
  • io.github.msdk.util.MsSpectrumUtil
  • fr.profi.mzdb.util.ms.MsUtils
  • fr.profi.mzdb.util.primitives.MutableInt (implements java.lang.Comparable<T>)
  • io.github.msdk.io.mzdata.MzDataFileImportMethod (implements io.github.msdk.MSDKMethod<ResultType>)
  • fr.profi.mzdb.cli.MzDbAccess
  • fr.profi.mzdb.cli.MzDbAccess.CreateMgfCommand
  • fr.profi.mzdb.cli.MzDbAccess.DebugCommand
  • fr.profi.mzdb.cli.MzDbAccess.ExtractPeaksCommand
  • fr.profi.mzdb.io.reader.cache.MzDbEntityCache
  • fr.profi.mzdb.io.reader.cache.MzDbEntityCacheContainer
    • fr.profi.mzdb.io.reader.cache.AbstractDataEncodingReader
      • fr.profi.mzdb.io.reader.cache.DataEncodingAsyncReader
      • fr.profi.mzdb.io.reader.cache.DataEncodingReader
    • fr.profi.mzdb.io.reader.cache.AbstractRunSliceHeaderReader
      • fr.profi.mzdb.io.reader.cache.RunSliceHeaderAsyncReader
      • fr.profi.mzdb.io.reader.cache.RunSliceHeaderReader
    • fr.profi.mzdb.io.reader.cache.AbstractSpectrumHeaderReader
      • fr.profi.mzdb.io.reader.cache.SpectrumHeaderAsyncReader
      • fr.profi.mzdb.io.reader.cache.SpectrumHeaderReader
  • io.github.msdk.io.mzdb.MzDBFileImportMethod (implements io.github.msdk.MSDKMethod<ResultType>)
  • fr.profi.mzdb.db.model.MzDBParamName_0_8 (implements fr.profi.mzdb.db.model.IMzDBParamNameGetter)
  • fr.profi.mzdb.db.model.MzDBParamName_0_9 (implements fr.profi.mzdb.db.model.IMzDBParamNameGetter)
  • io.github.msdk.io.mzdb.MzDBRawDataFile (implements io.github.msdk.datamodel.RawDataFile)
  • fr.profi.mzdb.MzDbReaderHelper
  • fr.profi.mzdb.io.reader.MzDbReaderQueries
  • io.github.msdk.io.mzml.data.MzMLBinaryDataInfo
  • io.github.msdk.io.mzml.data.MzMLCV
  • io.github.msdk.io.mzml.data.MzMLCVGroup
    • io.github.msdk.io.mzml.data.MzMLIsolationWindow
    • io.github.msdk.io.mzml.data.MzMLPrecursorActivation
    • io.github.msdk.io.mzml.data.MzMLPrecursorSelectedIon
    • io.github.msdk.io.mzml.data.MzMLReferenceableParamGroup
    • io.github.msdk.io.mzml.data.MzMLScan
    • io.github.msdk.io.mzml.data.MzMLScanList
    • io.github.msdk.io.mzml.data.MzMLScanWindow
  • io.github.msdk.io.mzml.data.MzMLCVParam
  • io.github.msdk.io.mzml.MzMLFileExportMethod (implements io.github.msdk.MSDKMethod<ResultType>)
  • io.github.msdk.io.mzml.MzMLFileImportMethod (implements io.github.msdk.MSDKMethod<ResultType>)
  • io.github.msdk.io.mzml.data.MzMLMsScan (implements io.github.msdk.datamodel.MsScan)
  • io.github.msdk.io.mzml.data.MzMLParser
  • io.github.msdk.io.mzml.data.MzMLPeaksDecoder
  • io.github.msdk.io.mzml.data.MzMLPeaksEncoder
  • io.github.msdk.io.mzml.data.MzMLPrecursorElement
  • io.github.msdk.io.mzml.data.MzMLPrecursorList
  • io.github.msdk.io.mzml.data.MzMLPrecursorSelectedIonList
  • io.github.msdk.io.mzml.data.MzMLProduct
  • io.github.msdk.io.mzml.data.MzMLProductList
  • io.github.msdk.io.mzml.data.MzMLRawDataFile (implements io.github.msdk.datamodel.RawDataFile)
  • io.github.msdk.io.mzml.data.MzMLScanWindowList
  • io.github.msdk.io.mzml.data.MzMLTags
  • io.github.msdk.io.mztab.MzTabFileExportMethod (implements io.github.msdk.MSDKMethod<ResultType>)
  • io.github.msdk.io.mztab.MzTabFileImportMethod (implements io.github.msdk.MSDKMethod<ResultType>)
  • io.github.msdk.io.mzxml.MzXMLFileImportMethod (implements io.github.msdk.MSDKMethod<ResultType>)
  • io.github.msdk.io.mzxml.MzXMLFileMemoryMapper
  • io.github.msdk.io.mzxml.MzXMLFileParser (implements io.github.msdk.MSDKMethod<ResultType>)
  • io.github.msdk.io.mzxml.MzXMLRawDataFile (implements io.github.msdk.datamodel.RawDataFile)
  • io.github.msdk.id.sirius.NativeLibraryLoader
  • io.github.msdk.io.netcdf.NetCDFFileExportMethod (implements io.github.msdk.MSDKMethod<ResultType>)
  • io.github.msdk.io.netcdf.NetCDFFileImportMethod (implements io.github.msdk.MSDKMethod<ResultType>)
  • fr.profi.mzdb.util.iterator.NullIterator (implements java.util.Iterator<E>)
  • rx.Observable<T>
    • fr.profi.mzdb.util.sqlite.SQLiteObservableJob<T>
    • fr.profi.mzdb.util.sqlite.SQLiteObservableRecord
  • fr.profi.mzdb.io.reader.table.ParamTreeParser
  • io.github.msdk.io.chromatof.ParserUtilities
  • io.github.msdk.featuredetection.adap3d.datamodel.Peak (implements java.lang.Cloneable, java.io.Serializable)
  • fr.profi.mzdb.model.Peak (implements java.lang.Cloneable, java.lang.Comparable<T>)
  • io.github.msdk.featuredetection.adap3d.algorithms.Peak3DTest
  • io.github.msdk.featuredetection.adap3d.algorithms.Peak3DTest.Result
  • io.github.msdk.featuredetection.adap3d.datamodel.PeakInfo (implements java.lang.Comparable<T>, java.util.Comparator<T>, java.io.Serializable)
  • io.github.msdk.spectra.peakinvestigator.providers.PeakInvestigatorDefaultProviderFactory (implements io.github.msdk.spectra.peakinvestigator.providers.PeakInvestigatorProviderFactory)
  • io.github.msdk.spectra.peakinvestigator.PeakInvestigatorMsSpectrum (implements io.github.msdk.datamodel.MsSpectrum)
  • io.github.msdk.spectra.peakinvestigator.PeakInvestigatorMsSpectrum.Error
  • io.github.msdk.spectra.peakinvestigator.PeakInvestigatorScanBundlingMethod (implements io.github.msdk.MSDKMethod<ResultType>)
  • io.github.msdk.spectra.peakinvestigator.PeakInvestigatorScanExtractingMethod (implements io.github.msdk.MSDKMethod<ResultType>)
  • fr.profi.mzdb.db.model.params.Precursor
  • io.github.msdk.alignment.ransac.RANSAC
  • io.github.msdk.alignment.ransac.RansacAlignerMethod (implements io.github.msdk.MSDKMethod<ResultType>)
  • io.github.msdk.io.RawDataFileImportMethod (implements io.github.msdk.MSDKMethod<ResultType>)
  • io.github.msdk.util.RawDataFileUtil
  • io.github.msdk.spectra.centroiding.RecursiveCentroidingAlgorithm (implements io.github.msdk.spectra.centroiding.MSDKCentroidingAlgorithm)
  • io.github.msdk.rawdata.filters.ResampleFilterAlgorithm (implements io.github.msdk.rawdata.filters.MSDKFilteringAlgorithm)
  • io.github.msdk.featuredetection.adap3d.datamodel.Result
  • io.github.msdk.featuredetection.adap3d.datamodel.Ridgeline
  • io.github.msdk.alignment.ransac.RTs (implements java.util.Comparator<T>)
  • io.github.msdk.util.tolerances.RTTolerance
  • fr.profi.mzdb.model.RunSlice
  • fr.profi.mzdb.io.reader.provider.RunSliceDataProvider
  • io.github.msdk.rawdata.filters.SGFilterAlgorithm (implements io.github.msdk.rawdata.filters.MSDKFilteringAlgorithm)
  • io.github.msdk.featuredetection.adap3d.algorithms.SignalToNoise
  • io.github.msdk.datamodel.SimpleActivationInfo (implements io.github.msdk.datamodel.ActivationInfo)
  • io.github.msdk.datamodel.SimpleChromatogram (implements io.github.msdk.datamodel.Chromatogram)
  • io.github.msdk.datamodel.SimpleFeature (implements io.github.msdk.datamodel.Feature)
  • io.github.msdk.datamodel.SimpleFeatureTable (implements io.github.msdk.datamodel.FeatureTable)
  • io.github.msdk.datamodel.SimpleFeatureTableRow (implements io.github.msdk.datamodel.FeatureTableRow)
  • io.github.msdk.datamodel.SimpleIonAnnotation (implements io.github.msdk.datamodel.IonAnnotation)
    • io.github.msdk.id.sirius.SiriusIonAnnotation
  • io.github.msdk.datamodel.SimpleIonType (implements io.github.msdk.datamodel.IonType)
  • io.github.msdk.datamodel.SimpleIsolationInfo (implements io.github.msdk.datamodel.IsolationInfo)
  • io.github.msdk.datamodel.SimpleRawDataFile (implements io.github.msdk.datamodel.RawDataFile)
    • io.github.msdk.io.netcdf.NetCDFRawDataFile
  • io.github.msdk.datamodel.SimpleSample (implements io.github.msdk.datamodel.Sample)
  • io.github.msdk.id.sirius.SiriusIdentificationMethod (implements io.github.msdk.MSDKMethod<ResultType>)
  • io.github.msdk.featuredetection.adap3d.algorithms.SliceSparseMatrix
  • io.github.msdk.featuredetection.adap3d.algorithms.SliceSparseMatrix.Triplet
  • io.github.msdk.featuredetection.adap3d.algorithms.SliceSparseMatrix.VerticalSliceDataPoint
  • io.github.msdk.featuredetection.adap3d.algorithms.SortAndKeepOriginalIndecies (implements java.util.Comparator<T>)
  • fr.profi.mzdb.model.Spectrum
    • fr.profi.mzdb.model.SpectrumSlice
  • fr.profi.mzdb.model.SpectrumData
  • fr.profi.mzdb.io.reader.iterator.SpectrumRangeIterator (implements java.util.Iterator<E>)
  • io.github.msdk.spectra.centroidprofiledetection.SpectrumTypeDetectionAlgorithm
  • io.github.msdk.spectra.splash.SplashCalculationAlgorithm
  • fr.profi.mzdb.util.sqlite.SQLiteJobWrapper<T> (implements fr.profi.mzdb.util.sqlite.ISQLiteConnectionFunction<T>)
  • fr.profi.mzdb.util.sqlite.SQLiteQuery
  • fr.profi.mzdb.util.sqlite.SQLiteRecord
  • fr.profi.mzdb.util.sqlite.SQLiteRecordIterator (implements java.util.Iterator<E>)
  • fr.profi.mzdb.util.sqlite.SQLiteResultDescriptor
  • io.github.msdk.featuredetection.srm.SrmDetectionMethod (implements io.github.msdk.MSDKMethod<ResultType>)
  • io.github.msdk.io.mzml.util.TagTracker
  • io.github.msdk.featuredetection.targeted.TargetedDetectionMethod (implements io.github.msdk.MSDKMethod<ResultType>)
  • fr.profi.mzdb.db.model.params.thermo.ThermoFragmentationTarget
  • io.github.msdk.io.nativeformats.ThermoRawImportMethod (implements io.github.msdk.MSDKMethod<ResultType>)
  • fr.profi.mzdb.db.model.params.thermo.ThermoScanMetaData
  • java.lang.Throwable (implements java.io.Serializable)
    • java.lang.Exception
      • io.github.msdk.MSDKException
      • java.lang.RuntimeException
        • io.github.msdk.MSDKRuntimeException
          • io.github.msdk.MSDKConstraintViolationException
  • io.github.msdk.io.txt.TxtExportAlgorithm
  • io.github.msdk.io.txt.TxtImportAlgorithm
  • fr.profi.mzdb.db.model.params.param.UserParam
  • fr.profi.mzdb.db.model.params.param.UserText
  • io.github.msdk.io.nativeformats.WatersRawImportMethod (implements io.github.msdk.MSDKMethod<ResultType>)
  • io.github.msdk.spectra.centroiding.WaveletCentroidingAlgorithm (implements io.github.msdk.spectra.centroiding.MSDKCentroidingAlgorithm)
  • fr.profi.mzdb.util.jaxb.XercesSAXParser
  • io.github.msdk.io.mzxml.ZlibCompressionUtil

Interface Hierarchy

• io.github.msdk.datamodel.ActivationInfo
• fr.profi.mzdb.util.concurrent.Callback<T>
• io.github.msdk.datamodel.Chromatogram
• io.github.msdk.datamodel.Feature
  • io.github.msdk.datamodel.GroupedFeature
• io.github.msdk.datamodel.FeatureTable
• io.github.msdk.datamodel.FeatureTableRow
• fr.profi.mzdb.io.reader.bb.IBlobReader
• fr.profi.mzdb.model.ILcContext
• fr.profi.mzdb.db.model.IMzDBParamNameGetter
• io.github.msdk.datamodel.IonAnnotation
• io.github.msdk.datamodel.IonType
• fr.profi.mzdb.db.model.params.IParamContainer
• fr.profi.mzdb.io.writer.mgf.IPrecursorComputation
• io.github.msdk.datamodel.IsolationInfo
• fr.profi.mzdb.util.sqlite.ISQLiteConnectionFunction<T>
• fr.profi.mzdb.util.sqlite.ISQLiteRecordExtraction<T>
• fr.profi.mzdb.util.sqlite.ISQLiteRecordOperation
• fr.profi.mzdb.util.sqlite.ISQLiteStatementConsumer
• fr.profi.mzdb.io.reader.iterator.IStatementExtractor<T>
• fr.profi.mzdb.util.lambda.JavaStreamExceptionWrappers
• io.github.msdk.spectra.centroiding.MSDKCentroidingAlgorithm
• io.github.msdk.rawdata.filters.MSDKFilteringAlgorithm
• io.github.msdk.MSDKMethod<ResultType>
• io.github.msdk.spectra.similarity.MSDKSpectraComparisonAlgorithm
• io.github.msdk.datamodel.MsSpectrum
  • io.github.msdk.datamodel.MsScan
• io.github.msdk.util.tolerances.MzTolerance
• io.github.msdk.spectra.peakinvestigator.providers.PeakInvestigatorProvider
  • io.github.msdk.spectra.peakinvestigator.providers.PeakInvestigatorInitProvider
  • io.github.msdk.spectra.peakinvestigator.providers.PeakInvestigatorOptionsProvider
  • io.github.msdk.spectra.peakinvestigator.providers.PeakInvestigatorProjectProvider
• io.github.msdk.spectra.peakinvestigator.providers.PeakInvestigatorProviderFactory
• io.github.msdk.datamodel.RawDataFile
• io.github.msdk.datamodel.Sample

Enum Hierarchy

• java.lang.Object
  • java.lang.Enum<E> (implements java.lang.Comparable<T>, java.io.Serializable)
    • io.github.msdk.util.DataPointSorter.SortingProperty
    • io.github.msdk.util.DataPointSorter.SortingDirection
    • io.github.msdk.util.ChromatogramUtil.CalculationMethod
    • io.github.msdk.datamodel.SeparationType
    • io.github.msdk.datamodel.PolarityType
    • io.github.msdk.datamodel.MsSpectrumType
    • io.github.msdk.datamodel.MsScanType
    • io.github.msdk.datamodel.FileType
    • io.github.msdk.datamodel.ChromatogramType
    • io.github.msdk.datamodel.ActivationType
    • io.github.msdk.normalization.compound.NormalizationType
    • io.github.msdk.io.mzml.data.MzMLCompressionType
    • io.github.msdk.io.mzml.data.MzMLBitLength
    • io.github.msdk.io.mzml.data.MzMLArrayType
    • fr.profi.mzdb.XicMethod
    • fr.profi.mzdb.io.writer.mgf.PrecursorMzComputationEnum
    • fr.profi.mzdb.io.writer.mgf.MgfField
    • fr.profi.mzdb.model.PeakEncoding
    • fr.profi.mzdb.model.DataMode
    • fr.profi.mzdb.model.AcquisitionMode
    • fr.profi.mzdb.db.table.TableParamTreeSchemaTable
    • fr.profi.mzdb.db.table.SpectrumTable
    • fr.profi.mzdb.db.table.SourceFileTable
    • fr.profi.mzdb.db.table.SourceFileScanSettingsMapTable
    • fr.profi.mzdb.db.table.SoftwareTable
    • fr.profi.mzdb.db.table.SharedParamTreeTable
    • fr.profi.mzdb.db.table.ScanSettingsTable
    • fr.profi.mzdb.db.table.SampleTable
    • fr.profi.mzdb.db.table.RunTable
    • fr.profi.mzdb.db.table.RunSliceTable
    • fr.profi.mzdb.db.table.ProcessingMethodTable
    • fr.profi.mzdb.db.table.ParamTreeSchemaTable
    • fr.profi.mzdb.db.table.MzdbTable
    • fr.profi.mzdb.db.table.InstrumentConfigurationTable
    • fr.profi.mzdb.db.table.DataProcessingTable
    • fr.profi.mzdb.db.table.DataEncodingTable
    • fr.profi.mzdb.db.table.CvTable
    • fr.profi.mzdb.db.table.ControlledVocabularyTable
    • fr.profi.mzdb.db.table.ChromatogramTable
    • fr.profi.mzdb.db.table.BoundingBoxTable
    • fr.profi.mzdb.db.table.BoundingBoxRtreeTable
    • fr.profi.mzdb.db.table.BoundingBoxMsnRtreeTable
    • fr.profi.mzdb.db.model.params.param.CVEntry
    • io.github.msdk.io.chromatof.ChromaTofParser.Mode
    • io.github.msdk.io.chromatof.ChromaTofParser.ColumnName
    • io.github.msdk.spectra.peakinvestigator.providers.PeakInvestigatorProvider.Status