fr.profi.mzdb.io.reader.iterator

Class LcMsnRunSliceIterator

java.lang.Object

fr.profi.mzdb.io.reader.iterator.AbstractSpectrumSliceIterator

fr.profi.mzdb.io.reader.iterator.AbstractRunSliceIterator

fr.profi.mzdb.io.reader.iterator.LcMsnRunSliceIterator

All Implemented Interfaces:

Iterator<RunSlice>

public class LcMsnRunSliceIterator
extends AbstractRunSliceIterator
implements Iterator<RunSlice>

Class used for DIA/SWATH data

Field Summary

Fields inherited from class fr.profi.mzdb.io.reader.iterator.AbstractRunSliceIterator

bbHasNext, runSliceHeaderById, spectrumSliceBuffer

Fields inherited from class fr.profi.mzdb.io.reader.iterator.AbstractSpectrumSliceIterator

boundingBoxIterator, firstBB, statement

Constructor Summary

Constructors

Constructor and Description
LcMsnRunSliceIterator(AbstractMzDbReader mzDbReader, com.almworks.sqlite4java.SQLiteConnection connection, double minParentMz, double maxParentMz)
LcMsnRunSliceIterator(AbstractMzDbReader mzDbReader, com.almworks.sqlite4java.SQLiteConnection connection, double minParentMz, double maxParentMz, double minRunSliceMz, double maxRunSliceMz)

Method Summary

Methods inherited from class fr.profi.mzdb.io.reader.iterator.AbstractRunSliceIterator

initSpectrumSliceBuffer, next

Methods inherited from class fr.profi.mzdb.io.reader.iterator.AbstractSpectrumSliceIterator

closeStatement, getStatement, hasNext, initBB, remove

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface java.util.Iterator

forEachRemaining, hasNext, next, remove

Constructor Detail

LcMsnRunSliceIterator

public LcMsnRunSliceIterator(AbstractMzDbReader mzDbReader,
                             com.almworks.sqlite4java.SQLiteConnection connection,
                             double minParentMz,
                             double maxParentMz)
                      throws com.almworks.sqlite4java.SQLiteException,
                             StreamCorruptedException

Throws:

com.almworks.sqlite4java.SQLiteException

StreamCorruptedException

LcMsnRunSliceIterator

public LcMsnRunSliceIterator(AbstractMzDbReader mzDbReader,
                             com.almworks.sqlite4java.SQLiteConnection connection,
                             double minParentMz,
                             double maxParentMz,
                             double minRunSliceMz,
                             double maxRunSliceMz)
                      throws com.almworks.sqlite4java.SQLiteException,
                             StreamCorruptedException

Throws:

com.almworks.sqlite4java.SQLiteException

StreamCorruptedException