fr.profi.mzdb.io.reader.iterator

Class AbstractRunSliceIterator

java.lang.Object

fr.profi.mzdb.io.reader.iterator.AbstractSpectrumSliceIterator

fr.profi.mzdb.io.reader.iterator.AbstractRunSliceIterator

All Implemented Interfaces:

Iterator<RunSlice>

Direct Known Subclasses:

LcMsnRunSliceIterator, LcMsRunSliceIterator

public abstract class AbstractRunSliceIterator
extends AbstractSpectrumSliceIterator
implements Iterator<RunSlice>

Field Summary

Fields

Modifier and Type	Field and Description
protected boolean	bbHasNext
protected HashMap<Integer,RunSliceHeader>	runSliceHeaderById
protected SpectrumSlice[]	spectrumSliceBuffer

Fields inherited from class fr.profi.mzdb.io.reader.iterator.AbstractSpectrumSliceIterator

boundingBoxIterator, firstBB, statement

Constructor Summary

Constructors

Constructor and Description
AbstractRunSliceIterator(AbstractRunSliceHeaderReader runSliceHeaderReader, AbstractSpectrumHeaderReader spectrumHeaderReader, AbstractDataEncodingReader dataEncodingReader, com.almworks.sqlite4java.SQLiteConnection connection, String sqlQuery, int msLevel, ISQLiteStatementConsumer stmtBinder)

Method Summary

Modifier and Type	Method and Description
protected void	initSpectrumSliceBuffer()
RunSlice	next()

Methods inherited from class fr.profi.mzdb.io.reader.iterator.AbstractSpectrumSliceIterator

closeStatement, getStatement, hasNext, initBB, remove

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface java.util.Iterator

forEachRemaining, hasNext, remove

Field Detail

spectrumSliceBuffer

protected SpectrumSlice[] spectrumSliceBuffer

bbHasNext

protected boolean bbHasNext

runSliceHeaderById

protected final HashMap<Integer,RunSliceHeader> runSliceHeaderById

Constructor Detail

AbstractRunSliceIterator

public AbstractRunSliceIterator(AbstractRunSliceHeaderReader runSliceHeaderReader,
                                AbstractSpectrumHeaderReader spectrumHeaderReader,
                                AbstractDataEncodingReader dataEncodingReader,
                                com.almworks.sqlite4java.SQLiteConnection connection,
                                String sqlQuery,
                                int msLevel,
                                ISQLiteStatementConsumer stmtBinder)
                         throws com.almworks.sqlite4java.SQLiteException,
                                StreamCorruptedException

Throws:

com.almworks.sqlite4java.SQLiteException

StreamCorruptedException

Method Detail

initSpectrumSliceBuffer

protected void initSpectrumSliceBuffer()

next

public RunSlice next()

Specified by:

next in interface Iterator<RunSlice>