fr.profi.mzdb.io.reader.cache

Class AbstractDataEncodingReader

java.lang.Object

fr.profi.mzdb.io.reader.cache.MzDbEntityCacheContainer

fr.profi.mzdb.io.reader.cache.AbstractDataEncodingReader

Direct Known Subclasses:

DataEncodingAsyncReader, DataEncodingReader

public abstract class AbstractDataEncodingReader
extends MzDbEntityCacheContainer

The Class AbstractDataEncodingReader.

Author:

bouyssie

Constructor Summary

Constructors

Constructor and Description
AbstractDataEncodingReader(AbstractMzDbReader mzDbReader) Instantiates a new abstract data encoding reader.

Method Summary

Modifier and Type	Method and Description
protected DataEncoding	getDataEncoding(int dataEncodingId, com.almworks.sqlite4java.SQLiteConnection connection) Gets the data encoding.
protected Map<Integer,DataEncoding>	getDataEncodingById(com.almworks.sqlite4java.SQLiteConnection connection) Gets the data encoding by id.
Map<Long,DataEncoding>	getDataEncodingBySpectrumId(com.almworks.sqlite4java.SQLiteConnection connection) Gets the data encoding by spectrum id.
protected DataEncoding[]	getDataEncodings(com.almworks.sqlite4java.SQLiteConnection connection) Gets the data encodings.
protected DataEncoding	getSpectrumDataEncoding(long spectrumId, com.almworks.sqlite4java.SQLiteConnection connection) Gets the spectrum data encoding.

Methods inherited from class fr.profi.mzdb.io.reader.cache.MzDbEntityCacheContainer

getEntityCache, getMzDbReader

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

AbstractDataEncodingReader

public AbstractDataEncodingReader(AbstractMzDbReader mzDbReader)
                           throws com.almworks.sqlite4java.SQLiteException

Instantiates a new abstract data encoding reader.

Parameters:

mzDbReader - the mz db reader

modelVersion - the model version

Throws:

com.almworks.sqlite4java.SQLiteException - the SQ lite exception

Method Detail

getDataEncoding

protected DataEncoding getDataEncoding(int dataEncodingId,
                                       com.almworks.sqlite4java.SQLiteConnection connection)
                                throws com.almworks.sqlite4java.SQLiteException

Gets the data encoding.

Parameters:

dataEncodingId - the data encoding id

connection - the connection

Returns:

the data encoding

Throws:

com.almworks.sqlite4java.SQLiteException - the SQ lite exception

getDataEncodings

protected DataEncoding[] getDataEncodings(com.almworks.sqlite4java.SQLiteConnection connection)
                                   throws com.almworks.sqlite4java.SQLiteException

Gets the data encodings.

Parameters:

connection - the connection

Returns:

the data encodings

Throws:

com.almworks.sqlite4java.SQLiteException - the SQ lite exception

getDataEncodingById

protected Map<Integer,DataEncoding> getDataEncodingById(com.almworks.sqlite4java.SQLiteConnection connection)
                                                 throws com.almworks.sqlite4java.SQLiteException

Gets the data encoding by id.

Parameters:

connection - the connection

Returns:

the data encoding by id

Throws:

com.almworks.sqlite4java.SQLiteException - the SQ lite exception

getDataEncodingBySpectrumId

public Map<Long,DataEncoding> getDataEncodingBySpectrumId(com.almworks.sqlite4java.SQLiteConnection connection)
                                                   throws com.almworks.sqlite4java.SQLiteException

Gets the data encoding by spectrum id.

Parameters:

connection - the connection

Returns:

the data encoding by spectrum id

Throws:

com.almworks.sqlite4java.SQLiteException - the SQ lite exception

getSpectrumDataEncoding

protected DataEncoding getSpectrumDataEncoding(long spectrumId,
                                               com.almworks.sqlite4java.SQLiteConnection connection)
                                        throws com.almworks.sqlite4java.SQLiteException

Gets the spectrum data encoding.

Parameters:

spectrumId - the spectrum id

connection - the connection

Returns:

the spectrum data encoding

Throws:

com.almworks.sqlite4java.SQLiteException - the SQ lite exception