fr.profi.mzdb.io.reader.cache

Class RunSliceHeaderAsyncReader

java.lang.Object

fr.profi.mzdb.io.reader.cache.MzDbEntityCacheContainer

fr.profi.mzdb.io.reader.cache.AbstractRunSliceHeaderReader

fr.profi.mzdb.io.reader.cache.RunSliceHeaderAsyncReader

public class RunSliceHeaderAsyncReader
extends AbstractRunSliceHeaderReader

The Class RunSliceHeaderReader.

Author:

David Bouyssie

Constructor Summary

Constructors

Constructor and Description
RunSliceHeaderAsyncReader(MzDbAsyncReader mzDbReader) Instantiates a new run slice header reader.

Method Summary

Modifier and Type	Method and Description
MzDbAsyncReader	getMzDbReader() specialized getter
rx.Observable<RunSliceHeader>	getRunSliceForMz(double mz, int msLevel) Gets the run slice for mz.
rx.Observable<RunSliceHeader>	getRunSliceHeader(int id) Gets the run slice header.
rx.Observable<Map<Integer,RunSliceHeader>>	getRunSliceHeaderById() Gets the run slice header by id.
rx.Observable<HashMap<Integer,RunSliceHeader>>	getRunSliceHeaderById(int msLevel) Gets the run slice by id.
rx.Observable<RunSliceHeader[]>	getRunSliceHeaders() Gets the run slices.
rx.Observable<RunSliceHeader[]>	getRunSliceHeaders(int msLevel) Gets the run slices.
rx.Observable<int[]>	getRunSliceIdsForMzRange(double minMz, double maxMz, int msLevel) Gets the run slice ids for mz range.

Methods inherited from class fr.profi.mzdb.io.reader.cache.AbstractRunSliceHeaderReader

getRunSliceForMz, getRunSliceHeader, getRunSliceHeaderById, getRunSliceHeaderById, getRunSliceHeaders, getRunSliceHeaders, getRunSliceIdsForMzRange

Methods inherited from class fr.profi.mzdb.io.reader.cache.MzDbEntityCacheContainer

getEntityCache

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

RunSliceHeaderAsyncReader

public RunSliceHeaderAsyncReader(MzDbAsyncReader mzDbReader)

Instantiates a new run slice header reader.

Parameters:

mzDbReader - the mz db reader

Method Detail

getMzDbReader

public MzDbAsyncReader getMzDbReader()

specialized getter

Specified by:

getMzDbReader in class MzDbEntityCacheContainer

Returns:

reader

getRunSliceHeaders

public rx.Observable<RunSliceHeader[]> getRunSliceHeaders()

Gets the run slices.

Returns:

array of runSlice instance without data associated

Throws:

com.almworks.sqlite4java.SQLiteException - the SQLite exception

getRunSliceHeaders

public rx.Observable<RunSliceHeader[]> getRunSliceHeaders(int msLevel)

Gets the run slices.

Parameters:

msLevel - the ms level

Returns:

array of runSlice instance without data associated

Throws:

com.almworks.sqlite4java.SQLiteException - the SQLite exception

getRunSliceHeaderById

public rx.Observable<HashMap<Integer,RunSliceHeader>> getRunSliceHeaderById(int msLevel)

Gets the run slice by id.

Parameters:

msLevel - the ms level

Returns:

the run slice by id

Throws:

com.almworks.sqlite4java.SQLiteException - the sQ lite exception

getRunSliceHeaderById

public rx.Observable<Map<Integer,RunSliceHeader>> getRunSliceHeaderById()

Gets the run slice header by id.

Returns:

the run slice header by id

Throws:

com.almworks.sqlite4java.SQLiteException - the sQ lite exception

getRunSliceHeader

public rx.Observable<RunSliceHeader> getRunSliceHeader(int id)

Gets the run slice header.

Parameters:

id - the id

Returns:

the run slice header

Throws:

com.almworks.sqlite4java.SQLiteException - the sQ lite exception

getRunSliceForMz

public rx.Observable<RunSliceHeader> getRunSliceForMz(double mz,
                                                      int msLevel)

Gets the run slice for mz.

Parameters:

mz - the mz

msLevel - the ms level

Returns:

the run slice for mz

Throws:

com.almworks.sqlite4java.SQLiteException - the sQ lite exception

getRunSliceIdsForMzRange

public rx.Observable<int[]> getRunSliceIdsForMzRange(double minMz,
                                                     double maxMz,
                                                     int msLevel)

Gets the run slice ids for mz range.

Parameters:

minMz - the min mz

maxMz - the max mz

msLevel - the ms level

Returns:

the run slice ids for mz range

Throws:

com.almworks.sqlite4java.SQLiteException - the sQ lite exception