fr.profi.mzdb.io.reader.cache

Class RunSliceHeaderReader

java.lang.Object

fr.profi.mzdb.io.reader.cache.MzDbEntityCacheContainer

fr.profi.mzdb.io.reader.cache.AbstractRunSliceHeaderReader

fr.profi.mzdb.io.reader.cache.RunSliceHeaderReader

public class RunSliceHeaderReader
extends AbstractRunSliceHeaderReader

The Class RunSliceHeaderReader.

Author:

David Bouyssie

Constructor Summary

Constructors

Constructor and Description
RunSliceHeaderReader(MzDbReader mzDbReader) Instantiates a new run slice header reader.

Method Summary

Modifier and Type	Method and Description
MzDbReader	getMzDbReader() specialized getter
RunSliceHeader	getRunSliceForMz(double mz, int msLevel) Gets the run slice for mz.
RunSliceHeader	getRunSliceHeader(int id) Gets the run slice header.
Map<Integer,RunSliceHeader>	getRunSliceHeaderById() Gets the run slice header by id.
HashMap<Integer,RunSliceHeader>	getRunSliceHeaderById(int msLevel) Gets the run slice by id.
RunSliceHeader[]	getRunSliceHeaders() Gets the run slices.
RunSliceHeader[]	getRunSliceHeaders(int msLevel) Gets the run slices.
int[]	getRunSliceIdsForMzRange(double minMz, double maxMz, int msLevel) Gets the run slice ids for mz range.

Methods inherited from class fr.profi.mzdb.io.reader.cache.AbstractRunSliceHeaderReader

getRunSliceForMz, getRunSliceHeader, getRunSliceHeaderById, getRunSliceHeaderById, getRunSliceHeaders, getRunSliceHeaders, getRunSliceIdsForMzRange

Methods inherited from class fr.profi.mzdb.io.reader.cache.MzDbEntityCacheContainer

getEntityCache

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

RunSliceHeaderReader

public RunSliceHeaderReader(MzDbReader mzDbReader)

Instantiates a new run slice header reader.

Parameters:

mzDbReader - the mz db reader

Method Detail

getMzDbReader

public MzDbReader getMzDbReader()

specialized getter

Specified by:

getMzDbReader in class MzDbEntityCacheContainer

Returns:

reader

getRunSliceHeaders

public RunSliceHeader[] getRunSliceHeaders()
                                    throws com.almworks.sqlite4java.SQLiteException

Gets the run slices.

Returns:

array of runSlice instance without data associated

Throws:

com.almworks.sqlite4java.SQLiteException - the SQLite exception

getRunSliceHeaders

public RunSliceHeader[] getRunSliceHeaders(int msLevel)
                                    throws com.almworks.sqlite4java.SQLiteException

Gets the run slices.

Parameters:

msLevel - the ms level

Returns:

array of runSlice instance without data associated

Throws:

com.almworks.sqlite4java.SQLiteException - the SQLite exception

getRunSliceHeaderById

public HashMap<Integer,RunSliceHeader> getRunSliceHeaderById(int msLevel)
                                                      throws com.almworks.sqlite4java.SQLiteException

Gets the run slice by id.

Parameters:

msLevel - the ms level

Returns:

the run slice by id

Throws:

com.almworks.sqlite4java.SQLiteException - the sQ lite exception

getRunSliceHeaderById

public Map<Integer,RunSliceHeader> getRunSliceHeaderById()
                                                  throws com.almworks.sqlite4java.SQLiteException

Gets the run slice header by id.

Returns:

the run slice header by id

Throws:

com.almworks.sqlite4java.SQLiteException - the sQ lite exception

getRunSliceHeader

public RunSliceHeader getRunSliceHeader(int id)
                                 throws com.almworks.sqlite4java.SQLiteException

Gets the run slice header.

Parameters:

id - the id

Returns:

the run slice header

Throws:

com.almworks.sqlite4java.SQLiteException - the sQ lite exception

getRunSliceForMz

public RunSliceHeader getRunSliceForMz(double mz,
                                       int msLevel)
                                throws com.almworks.sqlite4java.SQLiteException

Gets the run slice for mz.

Parameters:

mz - the mz

msLevel - the ms level

Returns:

the run slice for mz

Throws:

com.almworks.sqlite4java.SQLiteException - the sQ lite exception

getRunSliceIdsForMzRange

public int[] getRunSliceIdsForMzRange(double minMz,
                                      double maxMz,
                                      int msLevel)
                               throws com.almworks.sqlite4java.SQLiteException

Gets the run slice ids for mz range.

Parameters:

minMz - the min mz

maxMz - the max mz

msLevel - the ms level

Returns:

the run slice ids for mz range

Throws:

com.almworks.sqlite4java.SQLiteException - the sQ lite exception