io.github.msdk.datamodel

Enum MsSpectrumType

java.lang.Object

java.lang.Enum<MsSpectrumType>

io.github.msdk.datamodel.MsSpectrumType

All Implemented Interfaces:

Serializable, Comparable<MsSpectrumType>

public enum MsSpectrumType
extends Enum<MsSpectrumType>

Defines a type of the mass spectrum. For exact definition of the different spectra types, see Deutsch, E. W. (2012). File Formats Commonly Used in Mass Spectrometry Proteomics. Molecular & Cellular Proteomics, 11(12), 1612–1621. doi:10.1074/mcp.R112.019695

Enum Constant Summary

Enum Constants

Enum Constant and Description
CENTROIDED Centroided mass spectrum.
PROFILE Profile (continuous) mass spectrum.
THRESHOLDED Thresholded mass spectrum.

Method Summary

Modifier and Type	Method and Description
static MsSpectrumType	valueOf(String name) Returns the enum constant of this type with the specified name.
static MsSpectrumType[]	values() Returns an array containing the constants of this enum type, in the order they are declared.

Methods inherited from class java.lang.Enum

clone, compareTo, equals, finalize, getDeclaringClass, hashCode, name, ordinal, toString, valueOf

Methods inherited from class java.lang.Object

getClass, notify, notifyAll, wait, wait, wait

Enum Constant Detail

PROFILE

public static final MsSpectrumType PROFILE

Profile (continuous) mass spectrum. Continuous stream of connected data points forms a spectrum consisting of individual peaks. Peaks represent detected ions. Each peak consists of multiple data points.

THRESHOLDED

public static final MsSpectrumType THRESHOLDED

Thresholded mass spectrum. Same as profile, but data points below certain intensity threshold are removed.

CENTROIDED

public static final MsSpectrumType CENTROIDED

Centroided mass spectrum. Contains discrete data points, one for each ion.

Method Detail

values

public static MsSpectrumType[] values()

Returns an array containing the constants of this enum type, in the order they are declared. This method may be used to iterate over the constants as follows:

for (MsSpectrumType c : MsSpectrumType.values())
    System.out.println(c);

Returns:

an array containing the constants of this enum type, in the order they are declared

valueOf

public static MsSpectrumType valueOf(String name)

Returns the enum constant of this type with the specified name. The string must match exactly an identifier used to declare an enum constant in this type. (Extraneous whitespace characters are not permitted.)

Parameters:

name - the name of the enum constant to be returned.

Returns:

the enum constant with the specified name

Throws:

IllegalArgumentException - if this enum type has no constant with the specified name

NullPointerException - if the argument is null