Package io.github.msdk.datamodel

Interface Summary

Interface	Description
ActivationInfo	Represents the fragmentation information of MS/MS experiments.
Chromatogram	Represents a single chromatogram.
Feature	A feature represents a single three-dimensional peak in an LC-MS or GC-MS dataset.
FeatureTable	A feature table consists of a list of named columns, each with a specific type for the values contained in it.
FeatureTableRow	FeatureTableRow interface.
GroupedFeature	A grouped MS feature that consists of several individual features (m/z and RT pairs).
IonAnnotation	Annotation of a detected feature with a chemical structure, formula, or textual description.
IonType	Annotation of ionization type
IsolationInfo	Represents the ion isolation information.
MsScan	Represents a single MS scan in a raw data file.
MsSpectrum	A mass spectrum.
RawDataFile	Raw data file, typically obtained by loading data from one of the supported file formats.
Sample	Sample interface.

Class Summary

Class	Description
AbstractMsSpectrum	Simple implementation of the MsSpectrum interface
SimpleActivationInfo	Implementation of FragmentationInfo
SimpleChromatogram	Simple implementation of the Chromatogram interface.
SimpleFeature	Implementation of the Feature interface.
SimpleFeatureTable	Implementation of the FeatureTable interface.
SimpleFeatureTableRow	Implementation of FeatureTableRow.
SimpleIonAnnotation	Simple IonAnnotation implementation;
SimpleIonType	Implementation of IonType
SimpleIsolationInfo	Implementation of IsolationInfo
SimpleMsScan	Simple implementation of the Scan interface.
SimpleMsSpectrum	Simple implementation of the MsSpectrum interface.
SimpleRawDataFile	Implementation of the RawDataFile interface.
SimpleSample	Implementation of Sample

Enum Summary

Enum	Description
ActivationType	Represents the various types of MS/MS experiments.
ChromatogramType	Represents the type of chromatogram.
FileType	Enum of supported raw data file formats
MsScanType	Represents the type of MS scan.
MsSpectrumType	Defines a type of the mass spectrum.
PolarityType	Represents the polarity of ionization.
SeparationType	Enum for different separation technologies used as a preprocessing step before the actual data point acquisition.