Uses of Package
io.github.msdk.datamodel

Packages that use io.github.msdk.datamodel

Package	Description
io.github.msdk.alignment.joinaligner
io.github.msdk.alignment.ransac
io.github.msdk.datamodel
io.github.msdk.featuredetection.adap3d
io.github.msdk.featuredetection.adap3d.algorithms
io.github.msdk.featuredetection.chromatogrambuilder
io.github.msdk.featuredetection.gridmass
io.github.msdk.featuredetection.msmsdetection
io.github.msdk.featuredetection.srm
io.github.msdk.featuredetection.targeted
io.github.msdk.id.localdatabase
io.github.msdk.id.sirius
io.github.msdk.io
io.github.msdk.io.chromatof
io.github.msdk.io.filetypedetection
io.github.msdk.io.mgf
io.github.msdk.io.msp
io.github.msdk.io.mzdata
io.github.msdk.io.mzdb
io.github.msdk.io.mzml
io.github.msdk.io.mzml.data
io.github.msdk.io.mztab
io.github.msdk.io.mzxml
io.github.msdk.io.nativeformats
io.github.msdk.io.netcdf
io.github.msdk.io.txt
io.github.msdk.isotopes.isotopegrouper
io.github.msdk.isotopes.isotopepattern
io.github.msdk.normalization.compound
io.github.msdk.rawdata.filters
io.github.msdk.spectra.centroiding
io.github.msdk.spectra.centroidprofiledetection
io.github.msdk.spectra.peakinvestigator
io.github.msdk.spectra.splash
io.github.msdk.util

Classes in io.github.msdk.datamodel used by io.github.msdk.alignment.joinaligner

Class and Description
FeatureTable A feature table consists of a list of named columns, each with a specific type for the values contained in it.

Classes in io.github.msdk.datamodel used by io.github.msdk.alignment.ransac

Class and Description
FeatureTable A feature table consists of a list of named columns, each with a specific type for the values contained in it.
FeatureTableRow FeatureTableRow interface.

Classes in io.github.msdk.datamodel used by io.github.msdk.datamodel

Class and Description
AbstractMsSpectrum Simple implementation of the MsSpectrum interface
ActivationInfo Represents the fragmentation information of MS/MS experiments.
ActivationType Represents the various types of MS/MS experiments.
Chromatogram Represents a single chromatogram.
ChromatogramType Represents the type of chromatogram.
Feature A feature represents a single three-dimensional peak in an LC-MS or GC-MS dataset.
FeatureTable A feature table consists of a list of named columns, each with a specific type for the values contained in it.
FeatureTableRow FeatureTableRow interface.
FileType Enum of supported raw data file formats
IonAnnotation Annotation of a detected feature with a chemical structure, formula, or textual description.
IonType Annotation of ionization type
IsolationInfo Represents the ion isolation information.
MsScan Represents a single MS scan in a raw data file.
MsScanType Represents the type of MS scan.
MsSpectrum A mass spectrum.
MsSpectrumType Defines a type of the mass spectrum.
PolarityType Represents the polarity of ionization.
RawDataFile Raw data file, typically obtained by loading data from one of the supported file formats.
Sample Sample interface.
SeparationType Enum for different separation technologies used as a preprocessing step before the actual data point acquisition.

Classes in io.github.msdk.datamodel used by io.github.msdk.featuredetection.adap3d

Class and Description
Feature A feature represents a single three-dimensional peak in an LC-MS or GC-MS dataset.
MsScan Represents a single MS scan in a raw data file.
RawDataFile Raw data file, typically obtained by loading data from one of the supported file formats.

Classes in io.github.msdk.datamodel used by io.github.msdk.featuredetection.adap3d.algorithms

Class and Description
MsScan Represents a single MS scan in a raw data file.
RawDataFile Raw data file, typically obtained by loading data from one of the supported file formats.

Classes in io.github.msdk.datamodel used by io.github.msdk.featuredetection.chromatogrambuilder

Class and Description
Chromatogram Represents a single chromatogram.
MsScan Represents a single MS scan in a raw data file.
RawDataFile Raw data file, typically obtained by loading data from one of the supported file formats.

Classes in io.github.msdk.datamodel used by io.github.msdk.featuredetection.gridmass

Class and Description
FeatureTable A feature table consists of a list of named columns, each with a specific type for the values contained in it.
MsScan Represents a single MS scan in a raw data file.
RawDataFile Raw data file, typically obtained by loading data from one of the supported file formats.

Classes in io.github.msdk.datamodel used by io.github.msdk.featuredetection.msmsdetection

Class and Description
IonAnnotation Annotation of a detected feature with a chemical structure, formula, or textual description.
MsScan Represents a single MS scan in a raw data file.
RawDataFile Raw data file, typically obtained by loading data from one of the supported file formats.

Classes in io.github.msdk.datamodel used by io.github.msdk.featuredetection.srm

Class and Description
Chromatogram Represents a single chromatogram.
RawDataFile Raw data file, typically obtained by loading data from one of the supported file formats.

Classes in io.github.msdk.datamodel used by io.github.msdk.featuredetection.targeted

Class and Description
Chromatogram Represents a single chromatogram.
IonAnnotation Annotation of a detected feature with a chemical structure, formula, or textual description.
RawDataFile Raw data file, typically obtained by loading data from one of the supported file formats.

Classes in io.github.msdk.datamodel used by io.github.msdk.id.localdatabase

Class and Description
FeatureTable A feature table consists of a list of named columns, each with a specific type for the values contained in it.
SimpleIonAnnotation Simple IonAnnotation implementation;

Classes in io.github.msdk.datamodel used by io.github.msdk.id.sirius

Class and Description
IonAnnotation Annotation of a detected feature with a chemical structure, formula, or textual description.
IonType Annotation of ionization type
MsSpectrum A mass spectrum.
SimpleIonAnnotation Simple IonAnnotation implementation;

Classes in io.github.msdk.datamodel used by io.github.msdk.io

Class and Description
FeatureTable A feature table consists of a list of named columns, each with a specific type for the values contained in it.
RawDataFile Raw data file, typically obtained by loading data from one of the supported file formats.

Classes in io.github.msdk.datamodel used by io.github.msdk.io.chromatof

Class and Description
FeatureTable A feature table consists of a list of named columns, each with a specific type for the values contained in it.

Classes in io.github.msdk.datamodel used by io.github.msdk.io.filetypedetection

Class and Description
FileType Enum of supported raw data file formats

Classes in io.github.msdk.datamodel used by io.github.msdk.io.mgf

Class and Description
AbstractMsSpectrum Simple implementation of the MsSpectrum interface
MsSpectrum A mass spectrum.
MsSpectrumType Defines a type of the mass spectrum.

Classes in io.github.msdk.datamodel used by io.github.msdk.io.msp

Class and Description
AbstractMsSpectrum Simple implementation of the MsSpectrum interface
MsSpectrum A mass spectrum.

Classes in io.github.msdk.datamodel used by io.github.msdk.io.mzdata

Class and Description
RawDataFile Raw data file, typically obtained by loading data from one of the supported file formats.

Classes in io.github.msdk.datamodel used by io.github.msdk.io.mzdb

Class and Description
Chromatogram Represents a single chromatogram.
FileType Enum of supported raw data file formats
MsScan Represents a single MS scan in a raw data file.
RawDataFile Raw data file, typically obtained by loading data from one of the supported file formats.

Classes in io.github.msdk.datamodel used by io.github.msdk.io.mzml

Class and Description
Chromatogram Represents a single chromatogram.
MsScan Represents a single MS scan in a raw data file.
RawDataFile Raw data file, typically obtained by loading data from one of the supported file formats.

Classes in io.github.msdk.datamodel used by io.github.msdk.io.mzml.data

Class and Description
ActivationInfo Represents the fragmentation information of MS/MS experiments.
Chromatogram Represents a single chromatogram.
FileType Enum of supported raw data file formats
IsolationInfo Represents the ion isolation information.
MsScan Represents a single MS scan in a raw data file.
MsScanType Represents the type of MS scan.
MsSpectrum A mass spectrum.
MsSpectrumType Defines a type of the mass spectrum.
PolarityType Represents the polarity of ionization.
RawDataFile Raw data file, typically obtained by loading data from one of the supported file formats.

Classes in io.github.msdk.datamodel used by io.github.msdk.io.mztab

Class and Description
FeatureTable A feature table consists of a list of named columns, each with a specific type for the values contained in it.

Classes in io.github.msdk.datamodel used by io.github.msdk.io.mzxml

Class and Description
Chromatogram Represents a single chromatogram.
FileType Enum of supported raw data file formats
MsScan Represents a single MS scan in a raw data file.
RawDataFile Raw data file, typically obtained by loading data from one of the supported file formats.

Classes in io.github.msdk.datamodel used by io.github.msdk.io.nativeformats

Class and Description
RawDataFile Raw data file, typically obtained by loading data from one of the supported file formats.

Classes in io.github.msdk.datamodel used by io.github.msdk.io.netcdf

Class and Description
AbstractMsSpectrum Simple implementation of the MsSpectrum interface
FileType Enum of supported raw data file formats
MsScan Represents a single MS scan in a raw data file.
MsSpectrum A mass spectrum.
MsSpectrumType Defines a type of the mass spectrum.
RawDataFile Raw data file, typically obtained by loading data from one of the supported file formats.
SimpleMsScan Simple implementation of the Scan interface.
SimpleRawDataFile Implementation of the RawDataFile interface.

Classes in io.github.msdk.datamodel used by io.github.msdk.io.txt

Class and Description
MsSpectrum A mass spectrum.
SimpleMsSpectrum Simple implementation of the MsSpectrum interface.

Classes in io.github.msdk.datamodel used by io.github.msdk.isotopes.isotopegrouper

Class and Description
FeatureTable A feature table consists of a list of named columns, each with a specific type for the values contained in it.

Classes in io.github.msdk.datamodel used by io.github.msdk.isotopes.isotopepattern

Class and Description
MsSpectrum A mass spectrum.

Classes in io.github.msdk.datamodel used by io.github.msdk.normalization.compound

Class and Description
FeatureTable A feature table consists of a list of named columns, each with a specific type for the values contained in it.
FeatureTableRow FeatureTableRow interface.

Classes in io.github.msdk.datamodel used by io.github.msdk.rawdata.filters

Class and Description
MsScan Represents a single MS scan in a raw data file.
RawDataFile Raw data file, typically obtained by loading data from one of the supported file formats.

Classes in io.github.msdk.datamodel used by io.github.msdk.spectra.centroiding

Class and Description
MsScan Represents a single MS scan in a raw data file.
RawDataFile Raw data file, typically obtained by loading data from one of the supported file formats.

Classes in io.github.msdk.datamodel used by io.github.msdk.spectra.centroidprofiledetection

Class and Description
MsSpectrum A mass spectrum.
MsSpectrumType Defines a type of the mass spectrum.

Classes in io.github.msdk.datamodel used by io.github.msdk.spectra.peakinvestigator

Class and Description
MsSpectrum A mass spectrum.
MsSpectrumType Defines a type of the mass spectrum.
RawDataFile Raw data file, typically obtained by loading data from one of the supported file formats.

Classes in io.github.msdk.datamodel used by io.github.msdk.spectra.splash

Class and Description
MsSpectrum A mass spectrum.

Classes in io.github.msdk.datamodel used by io.github.msdk.util

Class and Description
FeatureTable A feature table consists of a list of named columns, each with a specific type for the values contained in it.
FeatureTableRow FeatureTableRow interface.
IonType Annotation of ionization type
MsScan Represents a single MS scan in a raw data file.
MsSpectrum A mass spectrum.
RawDataFile Raw data file, typically obtained by loading data from one of the supported file formats.
SimpleMsScan Simple implementation of the Scan interface.