Uses of Interface
io.github.msdk.datamodel.IonAnnotation

Packages that use IonAnnotation

Package	Description
io.github.msdk.datamodel
io.github.msdk.featuredetection.msmsdetection
io.github.msdk.featuredetection.targeted
io.github.msdk.id.sirius

Uses of IonAnnotation in io.github.msdk.datamodel

Classes in io.github.msdk.datamodel that implement IonAnnotation

Modifier and Type	Class and Description
class	SimpleIonAnnotation Simple IonAnnotation implementation;

Methods in io.github.msdk.datamodel that return IonAnnotation

Modifier and Type	Method and Description
IonAnnotation	SimpleFeature.getIonAnnotation() getIonAnnotation.
IonAnnotation	SimpleChromatogram.getIonAnnotation() Returns the ion annotation for this chromatogram.
IonAnnotation	Feature.getIonAnnotation() getIonAnnotation.
IonAnnotation	Chromatogram.getIonAnnotation() Returns the ion annotation for this chromatogram.

Methods in io.github.msdk.datamodel with parameters of type IonAnnotation

Modifier and Type	Method and Description
void	SimpleFeature.setIonAnnotation(IonAnnotation ionAnnotation) Setter for the field ionAnnotation.
void	SimpleChromatogram.setIonAnnotation(IonAnnotation ionAnnotation)

Uses of IonAnnotation in io.github.msdk.featuredetection.msmsdetection

Methods in io.github.msdk.featuredetection.msmsdetection that return types with arguments of type IonAnnotation

Modifier and Type	Method and Description
List<IonAnnotation>	MsMsDetectionMethod.execute() Performs the algorithm.
List<IonAnnotation>	MsMsDetectionMethod.getResult() Returns the result of this algorithm, or null.

Uses of IonAnnotation in io.github.msdk.featuredetection.targeted

Constructor parameters in io.github.msdk.featuredetection.targeted with type arguments of type IonAnnotation

Constructor and Description
TargetedDetectionMethod(List<IonAnnotation> ionAnnotations, RawDataFile rawDataFile, MzTolerance mzTolerance, RTTolerance rtTolerance, Double intensityTolerance, Double noiseLevel) Constructor for TargetedDetectionMethod.

Uses of IonAnnotation in io.github.msdk.id.sirius

Classes in io.github.msdk.id.sirius that implement IonAnnotation

Modifier and Type	Class and Description
class	SiriusIonAnnotation Class SiriusIonAnnotation

Methods in io.github.msdk.id.sirius that return types with arguments of type IonAnnotation

Modifier and Type	Method and Description
List<IonAnnotation>	SiriusIdentificationMethod.execute()
List<IonAnnotation>	FingerIdWebMethod.execute()
List<IonAnnotation>	SiriusIdentificationMethod.getResult()
List<IonAnnotation>	FingerIdWebMethod.getResult()