io.github.msdk.datamodel

Class SimpleFeature

java.lang.Object

io.github.msdk.datamodel.SimpleFeature

All Implemented Interfaces:

Feature

public class SimpleFeature
extends Object
implements Feature

Implementation of the Feature interface.

Since:

0.0.8

Constructor Summary

Constructors

Constructor and Description
SimpleFeature()

Method Summary

Modifier and Type	Method and Description
Float	getArea() getArea.
Chromatogram	getChromatogram() getChromatogram.
Float	getHeight() getHeight.
IonAnnotation	getIonAnnotation() getIonAnnotation.
List<MsScan>	getMSMSSpectra() getMSMSSpectra.
Double	getMz() getMz.
Float	getRetentionTime() getRetentionTime.
Float	getScore() Returns arbitrary, dimension-less quality score for the feature
Float	getSNRatio() Returns signal to noise ratio.
void	setArea(Float area) Setter for the field area.
void	setChromatogram(Chromatogram chromatogram) Setter for the field chromatogram.
void	setHeight(Float height) Setter for the field height.
void	setIonAnnotation(IonAnnotation ionAnnotation) Setter for the field ionAnnotation.
void	setMSMSSpectra(List<MsScan> msmsSpectra) setMSMSSpectra.
void	setMz(Double mz) Setter for the field mz.
void	setRetentionTime(Float retentionTime) Setter for the field retentionTime.
void	setScore(Float score) Setter for the field score.
void	setSNRatio(Float snRatio) setSNRatio.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

SimpleFeature

public SimpleFeature()

Method Detail

getMz

public Double getMz()

getMz.

Specified by:

getMz in interface Feature

Returns:

a Double object.

getRetentionTime

public Float getRetentionTime()

getRetentionTime.

Specified by:

getRetentionTime in interface Feature

Returns:

a Float object.

getArea

public Float getArea()

getArea.

Specified by:

getArea in interface Feature

Returns:

a Float object.

getHeight

public Float getHeight()

getHeight.

Specified by:

getHeight in interface Feature

Returns:

a Float object.

getSNRatio

public Float getSNRatio()

Returns signal to noise ratio.

Specified by:

getSNRatio in interface Feature

Returns:

S/N ratio, null if the method does not estimate it, NaN if noise was estimated to 0

getScore

public Float getScore()

Returns arbitrary, dimension-less quality score for the feature

Specified by:

getScore in interface Feature

Returns:

Score

getChromatogram

public Chromatogram getChromatogram()

getChromatogram.

Specified by:

getChromatogram in interface Feature

Returns:

a Chromatogram object.

getMSMSSpectra

public List<MsScan> getMSMSSpectra()

getMSMSSpectra.

Specified by:

getMSMSSpectra in interface Feature

Returns:

a List object.

getIonAnnotation

public IonAnnotation getIonAnnotation()

getIonAnnotation.

Specified by:

getIonAnnotation in interface Feature

Returns:

a IonAnnotation object.

setMz

public void setMz(Double mz)

Setter for the field mz.

Parameters:

mz - a Double object.

setRetentionTime

public void setRetentionTime(Float retentionTime)

Setter for the field retentionTime.

Parameters:

retentionTime - a Float object.

setArea

public void setArea(Float area)

Setter for the field area.

Parameters:

area - a Float object.

setHeight

public void setHeight(Float height)

Setter for the field height.

Parameters:

height - a Float object.

setSNRatio

public void setSNRatio(Float snRatio)

setSNRatio.

Parameters:

snRatio - a Float object.

setScore

public void setScore(Float score)

Setter for the field score.

Parameters:

score - a Float object.

setChromatogram

public void setChromatogram(Chromatogram chromatogram)

Setter for the field chromatogram.

Parameters:

chromatogram - a Chromatogram object.

setMSMSSpectra

public void setMSMSSpectra(List<MsScan> msmsSpectra)

setMSMSSpectra.

Parameters:

msmsSpectra - a List object.

setIonAnnotation

public void setIonAnnotation(IonAnnotation ionAnnotation)

Setter for the field ionAnnotation.

Parameters:

ionAnnotation - a IonAnnotation object.