fr.profi.mzdb.io.reader.iterator

Class SpectrumIterator

java.lang.Object

fr.profi.mzdb.io.reader.iterator.AbstractSpectrumSliceIterator

fr.profi.mzdb.io.reader.iterator.SpectrumIterator

All Implemented Interfaces:

Iterator<Spectrum>

public class SpectrumIterator
extends AbstractSpectrumSliceIterator
implements Iterator<Spectrum>

Field Summary

Fields

Modifier and Type	Field and Description
protected boolean	bbHasNext
protected SpectrumSlice[]	firstSpectrumSlices
protected SpectrumSlice[]	spectrumSliceBuffer
protected int	spectrumSliceIdx
protected boolean	usePriorityQueue

Fields inherited from class fr.profi.mzdb.io.reader.iterator.AbstractSpectrumSliceIterator

boundingBoxIterator, firstBB, statement

Constructor Summary

Constructors

Constructor and Description
SpectrumIterator(AbstractMzDbReader mzDbReader, com.almworks.sqlite4java.SQLiteConnection connection)
SpectrumIterator(AbstractMzDbReader mzDbReader, com.almworks.sqlite4java.SQLiteConnection connection, int msLevel)

Method Summary

Modifier and Type	Method and Description
protected void	initSpectrumSliceBuffer()
Spectrum	next()

Methods inherited from class fr.profi.mzdb.io.reader.iterator.AbstractSpectrumSliceIterator

closeStatement, getStatement, hasNext, initBB, remove

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface java.util.Iterator

forEachRemaining, hasNext, remove

Field Detail

spectrumSliceIdx

protected int spectrumSliceIdx

usePriorityQueue

protected final boolean usePriorityQueue

firstSpectrumSlices

protected SpectrumSlice[] firstSpectrumSlices

spectrumSliceBuffer

protected SpectrumSlice[] spectrumSliceBuffer

bbHasNext

protected boolean bbHasNext

Constructor Detail

SpectrumIterator

public SpectrumIterator(AbstractMzDbReader mzDbReader,
                        com.almworks.sqlite4java.SQLiteConnection connection)
                 throws com.almworks.sqlite4java.SQLiteException,
                        StreamCorruptedException

Throws:

com.almworks.sqlite4java.SQLiteException

StreamCorruptedException

SpectrumIterator

public SpectrumIterator(AbstractMzDbReader mzDbReader,
                        com.almworks.sqlite4java.SQLiteConnection connection,
                        int msLevel)
                 throws com.almworks.sqlite4java.SQLiteException,
                        StreamCorruptedException

Throws:

com.almworks.sqlite4java.SQLiteException

StreamCorruptedException

Method Detail

initSpectrumSliceBuffer

protected void initSpectrumSliceBuffer()

next

public Spectrum next()

Specified by:

next in interface Iterator<Spectrum>