Uses of Interface
io.github.msdk.util.tolerances.MzTolerance

Packages that use MzTolerance

Package	Description
io.github.msdk.alignment.joinaligner
io.github.msdk.alignment.ransac
io.github.msdk.datamodel
io.github.msdk.featuredetection.chromatogrambuilder
io.github.msdk.featuredetection.gridmass
io.github.msdk.featuredetection.msmsdetection
io.github.msdk.featuredetection.targeted
io.github.msdk.id.localdatabase
io.github.msdk.io.mzml.data
io.github.msdk.isotopes.isotopegrouper
io.github.msdk.spectra.peakinvestigator
io.github.msdk.util.tolerances

Uses of MzTolerance in io.github.msdk.alignment.joinaligner

Constructors in io.github.msdk.alignment.joinaligner with parameters of type MzTolerance

Constructor and Description
JoinAlignerMethod(List<FeatureTable> featureTables, MzTolerance mzTolerance, RTTolerance rtTolerance) Constructor for MatchAlignerMethod.

Uses of MzTolerance in io.github.msdk.alignment.ransac

Constructors in io.github.msdk.alignment.ransac with parameters of type MzTolerance

Constructor and Description
RansacAlignerMethod(List<FeatureTable> featureTables, MzTolerance mzTolerance, RTTolerance rtTolerance, String featureTableName, double t, boolean linear, double dataPointsRate) Constructor for RansacAlignerMethod.

Uses of MzTolerance in io.github.msdk.datamodel

Methods in io.github.msdk.datamodel that return MzTolerance

Modifier and Type	Method and Description
MzTolerance	SimpleMsScan.getMzTolerance() Returns an object that implements the MzTolerance interface.
MzTolerance	MsSpectrum.getMzTolerance() Returns an object that implements the MzTolerance interface.
MzTolerance	AbstractMsSpectrum.getMzTolerance() Returns an object that implements the MzTolerance interface.

Methods in io.github.msdk.datamodel with parameters of type MzTolerance

Modifier and Type	Method and Description
void	SimpleMsScan.setMzTolerance(MzTolerance mzTolerance) Setter for the field mzTolerance.
void	AbstractMsSpectrum.setMzTolerance(MzTolerance mzTolerance) Setter for the field mzTolerance.

Uses of MzTolerance in io.github.msdk.featuredetection.chromatogrambuilder

Constructors in io.github.msdk.featuredetection.chromatogrambuilder with parameters of type MzTolerance

Constructor and Description
ChromatogramBuilderMethod(RawDataFile inputFile, double noiseLevel, double minimumTimeSpan, double minimumHeight, MzTolerance mzTolerance) Constructor for ChromatogramBuilderMethod.
ChromatogramBuilderMethod(RawDataFile inputFile, List<MsScan> inputScans, Double noiseLevel, Double minimumTimeSpan, Double minimumHeight, MzTolerance mzTolerance) Constructor for ChromatogramBuilderMethod.

Uses of MzTolerance in io.github.msdk.featuredetection.gridmass

Constructors in io.github.msdk.featuredetection.gridmass with parameters of type MzTolerance

Constructor and Description
GridMassMethod(RawDataFile rawDataFile, List<MsScan> scans, MzTolerance mzTol, Double intensitySimilarity, Double minimumTimeSpan, Double maximumTimeSpan, Double smoothTimeSpan, Double smoothTimeMZ, Double smoothMZ, Double additionTimeMaxPeaksPerScan, Double minimumHeight, Double rtPerScan) Constructor for GridMassMethod.

Uses of MzTolerance in io.github.msdk.featuredetection.msmsdetection

Constructors in io.github.msdk.featuredetection.msmsdetection with parameters of type MzTolerance

Constructor and Description
MsMsDetectionMethod(RawDataFile rawDataFile, List<MsScan> msScans, MzTolerance mzTolerance, RTTolerance rtTolerance, Double intensityTolerance) Constructor for MsMsDetectionMethod.

Uses of MzTolerance in io.github.msdk.featuredetection.targeted

Constructors in io.github.msdk.featuredetection.targeted with parameters of type MzTolerance

Constructor and Description
TargetedDetectionMethod(List<IonAnnotation> ionAnnotations, RawDataFile rawDataFile, MzTolerance mzTolerance, RTTolerance rtTolerance, Double intensityTolerance, Double noiseLevel) Constructor for TargetedDetectionMethod.

Uses of MzTolerance in io.github.msdk.id.localdatabase

Constructors in io.github.msdk.id.localdatabase with parameters of type MzTolerance

Constructor and Description
LocalDatabaseSearchMethod(FeatureTable featureTable, List<SimpleIonAnnotation> ionAnnotations, MzTolerance mzTolerance, RTTolerance rtTolerance) Constructor for LocalDatabaseSearchMethod.

Uses of MzTolerance in io.github.msdk.io.mzml.data

Methods in io.github.msdk.io.mzml.data that return MzTolerance

Modifier and Type	Method and Description
MzTolerance	MzMLMsScan.getMzTolerance() Returns an object that implements the MzTolerance interface.

Uses of MzTolerance in io.github.msdk.isotopes.isotopegrouper

Constructors in io.github.msdk.isotopes.isotopegrouper with parameters of type MzTolerance

Constructor and Description
IsotopeGrouperMethod(FeatureTable featureTable, MzTolerance mzTolerance, RTTolerance rtTolerance, Integer maximumCharge, Boolean requireMonotonicShape) Constructor for IsotopeGrouperMethod.

Uses of MzTolerance in io.github.msdk.spectra.peakinvestigator

Methods in io.github.msdk.spectra.peakinvestigator that return MzTolerance

Modifier and Type	Method and Description
MzTolerance	PeakInvestigatorMsSpectrum.getMzTolerance() Returns an object that implements the MzTolerance interface.

Uses of MzTolerance in io.github.msdk.util.tolerances

Classes in io.github.msdk.util.tolerances that implement MzTolerance

Modifier and Type	Class and Description
class	ConstantDaTolerance ConstantDaTolerance class.
class	ConstantPpmTolerance ConstantPpmTolerance class.
class	MaximumMzTolerance This class represents m/z tolerance.