Uses of Class
fr.profi.mzdb.MzDbReader

Packages that use MzDbReader

Package	Description
fr.profi.mzdb.io.reader.cache
fr.profi.mzdb.io.writer.mgf

Uses of MzDbReader in fr.profi.mzdb.io.reader.cache

Methods in fr.profi.mzdb.io.reader.cache that return MzDbReader

Modifier and Type	Method and Description
MzDbReader	SpectrumHeaderReader.getMzDbReader() specialized getter
MzDbReader	RunSliceHeaderReader.getMzDbReader() specialized getter
MzDbReader	DataEncodingReader.getMzDbReader() specialized getter

Constructors in fr.profi.mzdb.io.reader.cache with parameters of type MzDbReader

Constructor and Description
DataEncodingReader(MzDbReader mzDbReader) Instantiates a new data encoding reader.
RunSliceHeaderReader(MzDbReader mzDbReader) Instantiates a new run slice header reader.
SpectrumHeaderReader(MzDbReader mzDbReader, AbstractDataEncodingReader dataEncodingReader)

Uses of MzDbReader in fr.profi.mzdb.io.writer.mgf

Methods in fr.profi.mzdb.io.writer.mgf that return MzDbReader

Modifier and Type	Method and Description
MzDbReader	MgfWriter.getMzDbReader()

Methods in fr.profi.mzdb.io.writer.mgf with parameters of type MzDbReader

Modifier and Type	Method and Description
protected double	DefaultPrecursorComputer.extractPrecMz(MzDbReader mzDbReader, Precursor precursor, double precMz, SpectrumHeader spectrumHeader, float timeTol) Detects isotopic pattern in the survey and return the most probable mono-isotopic m/z value
int	IPrecursorComputation.getPrecursorCharge(MzDbReader mzDbReader, SpectrumHeader spectrumHeader) Returns the precursor m/z value of the specified SpectrumHeader.
int	DefaultPrecursorComputer.getPrecursorCharge(MzDbReader mzDbReader, SpectrumHeader spectrumHeader)
double	IPrecursorComputation.getPrecursorMz(MzDbReader mzDbReader, SpectrumHeader spectrumHeader) Returns the precursor m/z value of the specified SpectrumHeader.
double	DefaultPrecursorComputer.getPrecursorMz(MzDbReader mzDbReader, SpectrumHeader spectrumHeader)
protected Double	DefaultPrecursorComputer.refinePrecMz(MzDbReader mzDbReader, Precursor precursor, double precMz, double mzTolPPM, float time, float timeTol) Refines the provided target m/z value by looking at the nearest value in the survey.