Uses of Class
fr.profi.mzdb.model.DataEncoding

Packages that use DataEncoding

Package	Description
fr.profi.mzdb
fr.profi.mzdb.io.reader.bb
fr.profi.mzdb.io.reader.cache
fr.profi.mzdb.io.reader.iterator
fr.profi.mzdb.io.writer.mgf
fr.profi.mzdb.model

Uses of DataEncoding in fr.profi.mzdb

Methods in fr.profi.mzdb that return DataEncoding

Modifier and Type	Method and Description
DataEncoding	MzDbReader.getDataEncoding(int id) Gets the data encoding.
DataEncoding	MzDbReader.getSpectrumDataEncoding(long spectrumId) Gets the spectrum data encoding.

Methods in fr.profi.mzdb that return types with arguments of type DataEncoding

Modifier and Type	Method and Description
rx.Observable<DataEncoding>	MzDbAsyncReader.getDataEncoding(int id) Gets the data encoding.
Map<Long,DataEncoding>	MzDbReader.getDataEncodingBySpectrumId() Gets the data encoding by spectrum id.
rx.Observable<Map<Long,DataEncoding>>	MzDbAsyncReader.getDataEncodingBySpectrumId() Gets the data encoding by spectrum id.
rx.Observable<DataEncoding>	MzDbAsyncReader.getSpectrumDataEncoding(long spectrumId) Gets the spectrum data encoding.

Uses of DataEncoding in fr.profi.mzdb.io.reader.bb

Fields in fr.profi.mzdb.io.reader.bb declared as DataEncoding

Modifier and Type	Field and Description
protected DataEncoding	BytesReader._firstDataEncondig

Fields in fr.profi.mzdb.io.reader.bb with type parameters of type DataEncoding

Modifier and Type	Field and Description
protected Map<Long,DataEncoding>	AbstractBlobReader._dataEncodingBySpectrumId

Methods in fr.profi.mzdb.io.reader.bb with parameters of type DataEncoding

Modifier and Type	Method and Description
protected void	AbstractBlobReader.checkDataEncodingIsNotNull(DataEncoding de, long spectrumId)
protected SpectrumData	AbstractBlobReader.readSpectrumSliceData(ByteBuffer bbByteBuffer, int spectrumSliceStartPos, int peaksBytesLength, DataEncoding de, double minMz, double maxMz) Read spectrum slice data by using a ByteBuffer as input

Method parameters in fr.profi.mzdb.io.reader.bb with type arguments of type DataEncoding

Modifier and Type	Method and Description
static BoundingBox	BoundingBoxBuilder.buildBB(int bbId, byte[] bytes, long firstSpectrumId, long lastSpectrumId, Map<Long,SpectrumHeader> spectrumHeaderById, Map<Long,DataEncoding> dataEncodingBySpectrumId)
static BoundingBox	BoundingBoxBuilder.buildBB(int bbId, InputStream stream, long firstSpectrumId, long lastSpectrumId, Map<Long,SpectrumHeader> spectrumHeaderById, Map<Long,DataEncoding> dataEncodingBySpectrumId)
static BoundingBox	BoundingBoxBuilder.buildBB(int bbId, com.almworks.sqlite4java.SQLiteBlob blob, long firstSpectrumId, long lastSpectrumId, Map<Long,SpectrumHeader> spectrumHeaderById, Map<Long,DataEncoding> dataEncodingBySpectrumId)

Constructor parameters in fr.profi.mzdb.io.reader.bb with type arguments of type DataEncoding

Constructor and Description
AbstractBlobReader(long firstSpectrumId, long lastSpectrumId, Map<Long,SpectrumHeader> spectrumHeaderById, Map<Long,DataEncoding> dataEncodingBySpectrumId) Abstract constructor
BytesReader(byte[] bytes, long firstSpectrumId, long lastSpectrumId, Map<Long,SpectrumHeader> spectrumHeaderById, Map<Long,DataEncoding> dataEncodingBySpectrumId) Constructor
SQLiteBlobReader(com.almworks.sqlite4java.SQLiteBlob blob, long firstSpectrumId, long lastSpectrumId, Map<Long,SpectrumHeader> spectrumHeaderById, Map<Long,DataEncoding> dataEncodingBySpectrumId) Constructor
StreamReader(InputStream inputStream, long firstSpectrumId, long lastSpectrumId, Map<Long,SpectrumHeader> spectrumHeaderById, Map<Long,DataEncoding> dataEncodingBySpectrumId)

Uses of DataEncoding in fr.profi.mzdb.io.reader.cache

Fields in fr.profi.mzdb.io.reader.cache with type parameters of type DataEncoding

Modifier and Type	Field and Description
protected Map<Integer,DataEncoding>	MzDbEntityCache.dataEncodingById
protected Map<Long,DataEncoding>	MzDbEntityCache.dataEncodingBySpectrumId

Methods in fr.profi.mzdb.io.reader.cache that return DataEncoding

Modifier and Type	Method and Description
DataEncoding	DataEncodingReader.getDataEncoding(int dataEncodingId) Gets the data encoding.
protected DataEncoding	AbstractDataEncodingReader.getDataEncoding(int dataEncodingId, com.almworks.sqlite4java.SQLiteConnection connection) Gets the data encoding.
DataEncoding[]	DataEncodingReader.getDataEncodings() Gets the data encodings.
protected DataEncoding[]	AbstractDataEncodingReader.getDataEncodings(com.almworks.sqlite4java.SQLiteConnection connection) Gets the data encodings.
DataEncoding	DataEncodingReader.getSpectrumDataEncoding(long spectrumId) Gets the spectrum data encoding.
protected DataEncoding	AbstractDataEncodingReader.getSpectrumDataEncoding(long spectrumId, com.almworks.sqlite4java.SQLiteConnection connection) Gets the spectrum data encoding.

Methods in fr.profi.mzdb.io.reader.cache that return types with arguments of type DataEncoding

Modifier and Type	Method and Description
rx.Observable<DataEncoding>	DataEncodingAsyncReader.getDataEncoding(int dataEncodingId) Gets the data encoding.
Map<Integer,DataEncoding>	DataEncodingReader.getDataEncodingById() Gets the data encoding by id.
rx.Observable<Map<Integer,DataEncoding>>	DataEncodingAsyncReader.getDataEncodingById() Gets the data encoding by id.
protected Map<Integer,DataEncoding>	AbstractDataEncodingReader.getDataEncodingById(com.almworks.sqlite4java.SQLiteConnection connection) Gets the data encoding by id.
Map<Long,DataEncoding>	MzDbEntityCache.getDataEncodingBySpectrumId()
Map<Long,DataEncoding>	DataEncodingReader.getDataEncodingBySpectrumId() Gets the data encoding by spectrum id.
rx.Observable<Map<Long,DataEncoding>>	DataEncodingAsyncReader.getDataEncodingBySpectrumId() Gets the data encoding by spectrum id.
Map<Long,DataEncoding>	AbstractDataEncodingReader.getDataEncodingBySpectrumId(com.almworks.sqlite4java.SQLiteConnection connection) Gets the data encoding by spectrum id.
rx.Observable<DataEncoding>	DataEncodingAsyncReader.getSpectrumDataEncoding(long spectrumId) Gets the spectrum data encoding.

Uses of DataEncoding in fr.profi.mzdb.io.reader.iterator

Fields in fr.profi.mzdb.io.reader.iterator with type parameters of type DataEncoding

Modifier and Type	Field and Description
protected Map<Long,DataEncoding>	BoundingBoxIterator.dataEncodingBySpectrumId

Uses of DataEncoding in fr.profi.mzdb.io.writer.mgf

Methods in fr.profi.mzdb.io.writer.mgf with parameters of type DataEncoding

Modifier and Type	Method and Description
protected String	MgfWriter.stringifySpectrum(Spectrum spectrum, DataEncoding dataEnc, IPrecursorComputation precComp, float intensityCutoff, boolean exportProlineTitle)

Uses of DataEncoding in fr.profi.mzdb.model

Methods in fr.profi.mzdb.model that return DataEncoding

Modifier and Type	Method and Description
DataEncoding	DataEncoding.clone()